Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00309 Eucalyptus grandis HOM05D000433 ORTHO05D003991 5.3e-59 230.7 108 100.0
Eucgr.C00288 Eucalyptus grandis HOM05D000433 ORTHO05D003991 3.2e-40 168.3 87 90.8
Eucgr.C00545 Eucalyptus grandis HOM05D000433 ORTHO05D003991 2.5e-32 142.1 84 77.4
Eucgr.C02919 Eucalyptus grandis HOM05D000433 ORTHO05D003991 2.6e-21 105.5 81 55.6
Atru.chr7.2110 Acer truncatum HOM05D000433 ORTHO05D003991 7.4e-21 104.0 99 50.5
Actinidia30272 Actinidia chinensis HOM05D000433 ORTHO05D003991 7.4e-21 104.0 91 52.7
CSS0045124 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.3e-20 103.2 86 57.0
Oeu057715.1 Olea europaea HOM05D000433 ORTHO05D003991 1.3e-20 103.2 84 59.5
Dinv14256 Davidia involucrata HOM05D000433 ORTHO05D003991 1.7e-20 102.8 84 52.4
ECA246G2703 Erigeron canadensis HOM05D000433 ORTHO05D003991 2.8e-20 102.1 90 53.3
Eucgr.C02920 Eucalyptus grandis HOM05D000433 ORTHO05D003991 3.7e-20 101.7 81 53.1
Manes.03G057900 Manihot esculenta HOM05D000433 ORTHO05D003991 3.7e-20 101.7 83 57.8
Manes.03G057750 Manihot esculenta HOM05D000433 ORTHO05D003991 8.2e-20 100.5 90 51.1
CSS0016926 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.1e-19 100.1 85 55.3
Atru.chr7.2098 Acer truncatum HOM05D000433 ORTHO05D003991 1.8e-19 99.4 99 49.5
CSS0015925 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.8e-19 99.4 85 55.3
ECA246G0302 Erigeron canadensis HOM05D000433 ORTHO05D003991 1.8e-19 99.4 90 52.2
Manes.16G076200 Manihot esculenta HOM05D000433 ORTHO05D003991 2.4e-19 99.0 83 57.8
Lj7C703T4 Lonicera japonica HOM05D000433 ORTHO05D003991 4.1e-19 98.2 85 51.8
Manes.03G058000 Manihot esculenta HOM05D000433 ORTHO05D003991 4.1e-19 98.2 83 55.4
Oeu036367.1 Olea europaea HOM05D000433 ORTHO05D003991 5.3e-19 97.8 81 51.9
Lsat_1_v5_gn_3_26280 Lactuca sativa HOM05D000433 ORTHO05D003991 1.2e-18 96.7 86 53.5
Atru.chr7.2096 Acer truncatum HOM05D000433 ORTHO05D003991 3.4e-18 95.1 85 50.6
Prupe.1G449300 Prunus persica HOM05D000433 ORTHO05D003991 3.4e-18 95.1 80 53.8
Haze_21881 Corylus avellana HOM05D000433 ORTHO05D003991 5.9e-18 94.4 84 53.6
FvH4_5g00520 Fragaria vesca HOM05D000433 ORTHO05D003991 1.3e-17 93.2 80 55.0
FAN08G0103 Fragaria x ananassa HOM05D000433 ORTHO05D003991 1.3e-17 93.2 80 55.0
FAN18G1489 Fragaria x ananassa HOM05D000433 ORTHO05D003991 1.3e-17 93.2 80 55.0
GSVIVG01035633001 Vitis vinifera HOM05D000433 ORTHO05D003991 1.3e-17 93.2 86 51.2
FAN13G2375 Fragaria x ananassa HOM05D000433 ORTHO05D003991 1.7e-17 92.8 80 55.0
Dinv14259 Davidia involucrata HOM05D000433 ORTHO05D003991 2.9e-17 92.0 84 51.2
Oeu057713.1 Olea europaea HOM05D000433 ORTHO05D003991 2.9e-17 92.0 82 51.2
MD15G1094300 Malus domestica HOM05D000433 ORTHO05D003991 5.0e-17 91.3 82 53.7
FvH4_2g35680 Fragaria vesca HOM05D000433 ORTHO05D003991 6.5e-17 90.9 79 53.2
Lsat_1_v5_gn_3_26320 Lactuca sativa HOM05D000433 ORTHO05D003991 6.5e-17 90.9 87 51.7
Dinv27895 Davidia involucrata HOM05D000433 ORTHO05D003991 8.5e-17 90.5 84 47.6
FvH4_2g35682 Fragaria vesca HOM05D000433 ORTHO05D003991 8.5e-17 90.5 77 54.5
FAN15G3649 Fragaria x ananassa HOM05D000433 ORTHO05D003991 8.5e-17 90.5 79 53.2
Potri.006G239402 Populus trichocarpa HOM05D000433 ORTHO05D003991 1.1e-16 90.1 82 51.2
Actinidia30273 Actinidia chinensis HOM05D000433 ORTHO05D003991 1.4e-16 89.7 83 45.8
Prupe.1G449200 Prunus persica HOM05D000433 ORTHO05D003991 1.9e-16 89.4 84 50.0
MBI04_g27076_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D003991 3.2e-16 88.6 85 50.6
PGR044G1800 Punica granatum HOM05D000433 ORTHO05D003991 4.2e-16 88.2 77 53.2
Sed0013565 Sechium edule HOM05D000433 ORTHO05D003991 4.2e-16 88.2 81 49.4
TAR383G0708 Trochodendron aralioides HOM05D000433 ORTHO05D003991 4.2e-16 88.2 87 49.4
Cc08_g09430 Coffea canephora HOM05D000433 ORTHO05D003991 5.5e-16 87.8 82 50.0
ECA246G4238 Erigeron canadensis HOM05D000433 ORTHO05D003991 5.5e-16 87.8 85 49.4
Eucgr.C02923 Eucalyptus grandis HOM05D000433 ORTHO05D003991 5.5e-16 87.8 86 50.0
Cc08_g09420 Coffea canephora HOM05D000433 ORTHO05D003991 2.1e-15 85.9 82 46.3
Dinv14257 Davidia involucrata HOM05D000433 ORTHO05D003991 2.1e-15 85.9 97 46.4
Migut.E01520 Erythranthe guttata HOM05D000433 ORTHO05D003991 2.1e-15 85.9 83 50.6
Thecc.09G043900 Theobroma cacao HOM05D000433 ORTHO05D003991 2.7e-15 85.5 80 52.5
TWI34G1621 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 3.6e-15 85.1 82 48.8
GSVIVG01035636001 Vitis vinifera HOM05D000433 ORTHO05D003991 3.6e-15 85.1 82 48.8
Ciclev10010551m.g Citrus clementina HOM05D000433 ORTHO05D003991 6.1e-15 84.3 84 44.0
CsaV3_3G048570 Cucumis sativus L. HOM05D000433 ORTHO05D003991 6.1e-15 84.3 85 47.1
Potri.018G042650 Populus trichocarpa HOM05D000433 ORTHO05D003991 1.0e-14 83.6 81 49.4
CSS0012936 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D003991 1.4e-14 83.2 78 50.0
Potri.018G043000 Populus trichocarpa HOM05D000433 ORTHO05D003991 1.4e-14 83.2 84 47.6
Gohir.1Z049422 Gossypium hirsutum HOM05D000433 ORTHO05D003991 2.3e-14 82.4 83 47.0
Gohir.A06G093600 Gossypium hirsutum HOM05D000433 ORTHO05D003991 2.3e-14 82.4 83 47.0
Gohir.D06G093300 Gossypium hirsutum HOM05D000433 ORTHO05D003991 2.3e-14 82.4 83 47.0
Gorai.010G107700 Gossypium raimondii HOM05D000433 ORTHO05D003991 2.3e-14 82.4 83 47.0
Prupe.1G449100 Prunus persica HOM05D000433 ORTHO05D003991 2.3e-14 82.4 85 47.1
TWI34G1265 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 3.0e-14 82.0 81 46.9
Potri.018G043500 Populus trichocarpa HOM05D000433 ORTHO05D003991 5.2e-14 81.3 82 47.6
Haze_16805 Corylus avellana HOM05D000433 ORTHO05D003991 6.7e-14 80.9 85 47.1
Eucgr.C02921 Eucalyptus grandis HOM05D000433 ORTHO05D003991 6.7e-14 80.9 81 46.9
COL.COLO4_18651 Corchorus olitorius HOM05D000433 ORTHO05D003991 8.8e-14 80.5 78 48.7
ECA233G3103 Erigeron canadensis HOM05D000433 ORTHO05D003991 1.1e-13 80.1 81 46.9
Thecc.09G043800 Theobroma cacao HOM05D000433 ORTHO05D003991 1.1e-13 80.1 81 46.9
DCAR_003121 Daucus carota HOM05D000433 ORTHO05D003991 1.5e-13 79.7 89 41.6
PSO210G3307 Papaver somniferum HOM05D000433 ORTHO05D003991 1.5e-13 79.7 80 46.2
RcHm_v2.0_Chr6g0306121 Rosa chinensis HOM05D000433 ORTHO05D003991 2.0e-13 79.3 55 63.6
ATR0705G050 Amborella trichopoda HOM05D000433 ORTHO05D003991 2.6e-13 79.0 88 43.2
FAN20G2984 Fragaria x ananassa HOM05D000433 ORTHO05D003991 2.6e-13 79.0 68 52.9
DCAR_003120 Daucus carota HOM05D000433 ORTHO05D003991 3.3e-13 78.6 86 45.3
TWI34G0034 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 4.4e-13 78.2 81 45.7
TWI34G0984 Tripterygium wilfordii HOM05D000433 ORTHO05D003991 5.7e-13 77.8 81 45.7
MD08G1115000 Malus domestica HOM05D000433 ORTHO05D003991 1.7e-12 76.3 87 44.8
Migut.A00213 Erythranthe guttata HOM05D000433 ORTHO05D003991 2.2e-12 75.9 86 43.0
Lsat_1_v5_gn_6_24381 Lactuca sativa HOM05D000433 ORTHO05D003991 2.2e-12 75.9 82 46.3
Sabra18G0043500 Salix brachista HOM05D000433 ORTHO05D003991 2.2e-12 75.9 83 42.2
ClCG00G005190 Citrullus lanatus HOM05D000433 ORTHO05D003991 2.8e-12 75.5 85 44.7
ClCG11G015170 Citrullus lanatus HOM05D000433 ORTHO05D003991 2.8e-12 75.5 85 44.7
Sabra18G0043200 Salix brachista HOM05D000433 ORTHO05D003991 2.8e-12 75.5 83 43.4
MD08G1115100 Malus domestica HOM05D000433 ORTHO05D003991 3.7e-12 75.1 87 43.7
Sabra18G0043600 Salix brachista HOM05D000433 ORTHO05D003991 6.3e-12 74.3 83 41.0
Sabra06G0187000 Salix brachista HOM05D000433 ORTHO05D003991 1.1e-11 73.6 82 41.5
ATR0705G137 Amborella trichopoda HOM05D000433 ORTHO05D003991 1.4e-11 73.2 81 44.4
Potri.006G239300 Populus trichocarpa HOM05D000433 ORTHO05D003991 1.4e-11 73.2 83 41.0
RcHm_v2.0_Chr6g0306131 Rosa chinensis HOM05D000433 ORTHO05D003991 1.8e-11 72.8 53 62.3
Duzib168G1402 Durio zibethinus HOM05D000433 ORTHO05D003991 2.4e-11 72.4 81 43.2
Sabra18G0043100 Salix brachista HOM05D000433 ORTHO05D003991 2.4e-11 72.4 83 42.2
MELO3C003462.2 Cucumis melo HOM05D000433 ORTHO05D003991 3.1e-11 72.0 84 42.9
FvH4_2g35670 Fragaria vesca HOM05D000433 ORTHO05D003991 3.1e-11 72.0 53 60.4
FAN20G2606 Fragaria x ananassa HOM05D000433 ORTHO05D003991 4.1e-11 71.6 53 60.4
MBI04_g27075_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D003991 7.0e-11 70.9 100 39.0
Potri.006G239200 Populus trichocarpa HOM05D000433 ORTHO05D003991 7.0e-11 70.9 83 39.8
HanXRQChr13g0401851 Helianthus annuus HOM05D000433 ORTHO05D003991 9.1e-11 70.5 80 43.8
HanXRQChr13g0401881 Helianthus annuus HOM05D000433 ORTHO05D003991 9.1e-11 70.5 80 43.8
Migut.E01521 Erythranthe guttata HOM05D000433 ORTHO05D003991 1.6e-10 69.7 118 34.7
Cpa.g.sc522.4 Carica papaya HOM05D000433 ORTHO05D003991 2.6e-10 68.9 60 51.7
Hma1.2p1_0049F.1_g028710 Hydrangea macrophylla HOM05D000433 ORTHO05D003991 2.6e-10 68.9 63 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3717 Anthoceros agrestis HOM05D000433 ORTHO05D003991 7.7e-10 67.4 98 37.8
AagrBONN_evm.TU.Sc2ySwM_344.3719 Anthoceros agrestis HOM05D000433 ORTHO05D003991 7.7e-10 67.4 81 40.7
Nitab4.5_0009835g0010 Nicotiana tabacum HOM05D000433 ORTHO05D003991 7.7e-10 67.4 83 43.4
AagrBONN_evm.TU.Sc2ySwM_344.3718 Anthoceros agrestis HOM05D000433 ORTHO05D003991 1.7e-09 66.2 80 38.8
Phvul.009G109100 Phaseolus vulgaris HOM05D000433 ORTHO05D003991 1.7e-09 66.2 52 55.8
ATR0705G033 Amborella trichopoda HOM05D000433 ORTHO05D003991 2.9e-09 65.5 89 37.1
Glyma.06G085000 Glycine max HOM05D000433 ORTHO05D003991 2.9e-09 65.5 52 55.8
HPP92_006323 Vanilla planifolia HOM05D000433 ORTHO05D003991 2.9e-09 65.5 83 38.6
HPP92_027883 Vanilla planifolia HOM05D000433 ORTHO05D003991 2.9e-09 65.5 83 38.6
Nitab4.5_0007838g0050 Nicotiana tabacum HOM05D000433 ORTHO05D003991 5.0e-09 64.7 53 58.5
PGSC0003DMG400004312 Solanum tuberosum HOM05D000433 ORTHO05D003991 5.0e-09 64.7 86 40.7
Nitab4.5_0009835g0020 Nicotiana tabacum HOM05D000433 ORTHO05D003991 6.5e-09 64.3 53 56.6
Peaxi162Scf00227g00007 Petunia axillaris HOM05D000433 ORTHO05D003991 6.5e-09 64.3 48 62.5
Peaxi162Scf00323g00925 Petunia axillaris HOM05D000433 ORTHO05D003991 8.5e-09 63.9 50 60.0
SMO244G0030 Selaginella moellendorffii HOM05D000433 ORTHO05D003991 8.5e-09 63.9 93 41.9
VMungo1309G1574 Vigna mungo HOM05D000433 ORTHO05D003991 1.1e-08 63.5 52 53.8
AagrBONN_evm.TU.Sc2ySwM_362.1491 Anthoceros agrestis HOM05D000433 ORTHO05D003991 2.5e-08 62.4 81 37.0
Glyma.04G083500 Glycine max HOM05D000433 ORTHO05D003991 2.5e-08 62.4 52 50.0
Gohir.D05G049100 Gossypium hirsutum HOM05D000433 ORTHO05D003991 3.2e-08 62.0 82 46.3
Peaxi162Scf00323g00934 Petunia axillaris HOM05D000433 ORTHO05D003991 3.2e-08 62.0 67 46.3
Gohir.D05G049000 Gossypium hirsutum HOM05D000433 ORTHO05D003991 5.5e-08 61.2 85 41.2
Gorai.009G050300 Gossypium raimondii HOM05D000433 ORTHO05D003991 5.5e-08 61.2 85 41.2
PGSC0003DMG400004311 Solanum tuberosum HOM05D000433 ORTHO05D003991 9.4e-08 60.5 55 49.1
GSVIVG01035632001 Vitis vinifera HOM05D000433 ORTHO05D003991 9.4e-08 60.5 60 51.7
Sopen11g028910 Solanum pennellii HOM05D000433 ORTHO05D003991 1.6e-07 59.7 57 49.1
CAN.G335.8 Capsicum annuum HOM05D000433 ORTHO05D003991 2.1e-07 59.3 55 49.1
Lj1g0017698 Lotus japonicus HOM05D000433 ORTHO05D003991 2.7e-07 58.9 52 51.9
AagrBONN_evm.TU.Sc2ySwM_117.3901 Anthoceros agrestis HOM05D000433 ORTHO05D003991 4.7e-07 58.2 84 35.7
Os06g0162550 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D003991 8.0e-07 57.4 55 45.5
Sopen08g020690 Solanum pennellii HOM05D000433 ORTHO05D003991 8.0e-07 57.4 48 56.2
arahy.Tifrunner.gnm1.ann1.I05T7U Arachis hypogaea HOM05D000433 ORTHO05D003991 1.0e-06 57.0 55 49.1
Gohir.A05G047200 Gossypium hirsutum HOM05D000433 ORTHO05D003991 1.0e-06 57.0 55 47.3
CANSAT25G0153 Cannabis sativa HOM05D000433 ORTHO05D003991 1.8e-06 56.2 67 37.3
Lj1g0021560 Lotus japonicus HOM05D000433 ORTHO05D003991 1.8e-06 56.2 47 53.2
Zm00001eb375850 Zea mays HOM05D000433 ORTHO05D003991 2.3e-06 55.8 60 43.3
arahy.Tifrunner.gnm1.ann1.YWII14 Arachis hypogaea HOM05D000433 ORTHO05D003991 3.0e-06 55.5 47 51.1
Glyma.06G085100 Glycine max HOM05D000433 ORTHO05D003991 3.0e-06 55.5 47 53.2
Os09g0321200 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D003991 3.0e-06 55.5 52 48.1
Mapoly0056s0019 Marchantia polymorpha HOM05D000433 ORTHO05D003991 4.0e-06 55.1 88 31.8
TPR.G1375 Trifolium pratense HOM05D000433 ORTHO05D003991 8.8e-06 53.9 55 47.3


User provided reference genes

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