Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 3.0e-63 245.0 121 100.0
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 5.2e-55 217.6 121 89.3
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.2e-32 143.3 128 61.7
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 8.1e-16 87.4 81 48.1
Eucgr.E01745 Eucalyptus grandis HOM05D067861 ORTHO05D012225 4.9e-13 78.2 86 37.2
QL02p094713 Quercus lobata HOM05D043071 ORTHO05D025275 4.9e-13 78.2 113 39.8
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 6.4e-13 77.8 80 41.2
Eucgr.E01746 Eucalyptus grandis HOM05D067861 ORTHO05D012225 2.4e-12 75.9 86 39.5
Glyma.05G076900 Glycine max HOM05D008402 ORTHO05D000988 5.4e-12 74.7 76 42.1
Phvul.001G071700 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 9.2e-12 73.9 84 41.7
Lj1g0004343 Lotus japonicus HOM05D008402 ORTHO05D000988 1.2e-11 73.6 124 30.6
Glyma.19G071200 Glycine max HOM05D008402 ORTHO05D000988 2.1e-11 72.8 76 40.8
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 2.7e-11 72.4 80 41.2
Duzib168G1766 Durio zibethinus HOM05D032872 ORTHO05D025275 3.5e-11 72.0 92 39.1
Lj1g0025701 Lotus japonicus HOM05D008402 ORTHO05D000988 4.6e-11 71.6 124 29.8
Medtr8g011770 Medicago truncatula HOM05D008402 ORTHO05D000988 4.6e-11 71.6 77 44.2
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 6.0e-11 71.2 91 36.3
Phvul.001G071800 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 6.0e-11 71.2 84 39.3
TPR.G29356 Trifolium pratense HOM05D008402 ORTHO05D000988 6.0e-11 71.2 77 41.6
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.8e-11 70.9 78 38.5
Lj1g0003999 Lotus japonicus HOM05D008402 ORTHO05D000988 7.8e-11 70.9 79 40.5
Medtr1g054815 Medicago truncatula HOM05D008402 ORTHO05D000988 7.8e-11 70.9 82 40.2
VMungo0647G2588 Vigna mungo HOM05D008402 ORTHO05D000988 7.8e-11 70.9 104 35.6
Lj1g0024978 Lotus japonicus HOM05D008402 ORTHO05D000988 1.0e-10 70.5 79 40.5
Medtr8g011740 Medicago truncatula HOM05D008402 ORTHO05D000988 1.0e-10 70.5 76 38.2
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.3e-10 70.1 84 36.9
VMungo0647G0396 Vigna mungo HOM05D008402 ORTHO05D000988 1.7e-10 69.7 88 37.5
Lj1g0017901 Lotus japonicus HOM05D008402 ORTHO05D000988 2.3e-10 69.3 79 38.0
Rhsim10G0080100 Rhododendron simsii HOM05D042140 ORTHO05D050654 2.3e-10 69.3 106 31.1
Glyma.13G031400 Glycine max HOM05D008402 ORTHO05D000988 3.0e-10 68.9 85 36.5
Lj1g0018072 Lotus japonicus HOM05D008402 ORTHO05D000988 3.0e-10 68.9 124 29.0
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.9e-10 68.6 80 35.0
MD13G1274700 Malus domestica HOM05D025175 ORTHO05D009651 3.9e-10 68.6 90 38.9
QL05p012573 Quercus lobata HOM05D008402 ORTHO05D000988 3.9e-10 68.6 81 35.8
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.1e-10 68.2 78 37.2
Medtr8g011760 Medicago truncatula HOM05D008402 ORTHO05D000988 5.1e-10 68.2 77 41.6
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 5.1e-10 68.2 86 37.2
Thecc.09G158300 Theobroma cacao HOM05D032872 ORTHO05D025275 5.1e-10 68.2 91 37.4
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.6e-10 67.8 78 34.6
Dinv34528 Davidia involucrata HOM05D008521 ORTHO05D012225 8.6e-10 67.4 85 37.6
Glyma.14G153100 Glycine max HOM05D008402 ORTHO05D000988 8.6e-10 67.4 85 35.3
Glyma.18G066800 Glycine max HOM05D008402 ORTHO05D000988 8.6e-10 67.4 79 36.7
VMungo0647G1641 Vigna mungo HOM05D008402 ORTHO05D000988 8.6e-10 67.4 86 38.4
Lj1g0006941 Lotus japonicus HOM05D008402 ORTHO05D000988 1.5e-09 66.6 79 39.2
QL02p094721 Quercus lobata HOM05D043071 ORTHO05D025275 1.5e-09 66.6 109 36.7
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-09 66.2 78 37.2
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-09 66.2 78 33.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-09 66.2 78 34.6
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.9e-09 66.2 83 36.1
Lalb_Chr01g0019651 Lupinus albus HOM05D008402 ORTHO05D000988 1.9e-09 66.2 84 39.3
Lj1g0020175 Lotus japonicus HOM05D008402 ORTHO05D000988 3.3e-09 65.5 79 36.7
Lj1g0020043 Lotus japonicus HOM05D008402 ORTHO05D000988 7.3e-09 64.3 78 37.2
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 7.3e-09 64.3 90 33.3
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 9.5e-09 63.9 87 37.9
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 1.2e-08 63.5 77 36.4
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.2e-08 63.5 77 35.1
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.2e-08 63.5 91 34.1
TPR.G20479 Trifolium pratense HOM05D008402 ORTHO05D000988 1.6e-08 63.2 78 41.0
Rhsim12G0147300 Rhododendron simsii HOM05D042140 ORTHO05D050654 2.1e-08 62.8 111 28.8
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.1e-08 62.8 80 33.8
Medtr8g011880 Medicago truncatula HOM05D008402 ORTHO05D000988 2.8e-08 62.4 76 35.5
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 3.6e-08 62.0 87 32.2
Lj3g0005293 Lotus japonicus HOM05D010700 ORTHO05D012225 4.7e-08 61.6 80 37.5
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.2e-08 61.2 79 34.2
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 6.2e-08 61.2 90 31.1
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.1e-08 60.8 77 33.8
Psat4g199160 Pisum sativum HOM05D008402 ORTHO05D000988 1.1e-07 60.5 77 33.8
Potri.002G229750 Populus trichocarpa HOM05D025175 ORTHO05D014166 1.1e-07 60.5 92 34.8
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 1.4e-07 60.1 78 35.9
Psat5g145680 Pisum sativum HOM05D008402 ORTHO05D000988 1.4e-07 60.1 76 34.2
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-07 59.7 80 28.8
Potri.002G229600 Populus trichocarpa HOM05D025175 ORTHO05D014166 1.8e-07 59.7 90 33.3
Potri.002G229700 Populus trichocarpa HOM05D025175 ORTHO05D014166 1.8e-07 59.7 90 33.3
QL11p022935 Quercus lobata HOM05D008402 ORTHO05D000988 1.8e-07 59.7 98 27.6
Glyma.19G054100 Glycine max HOM05D008402 ORTHO05D000988 2.3e-07 59.3 77 35.1
Psat4g199200 Pisum sativum HOM05D008402 ORTHO05D000988 2.3e-07 59.3 77 32.5
Potri.002G229650 Populus trichocarpa HOM05D025175 ORTHO05D014166 2.3e-07 59.3 87 34.5
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.2e-07 58.2 78 28.2
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.2e-07 58.2 77 32.5
Medtr8g063720 Medicago truncatula HOM05D010700 ORTHO05D012225 5.2e-07 58.2 80 33.8
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 5.2e-07 58.2 80 33.8
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 6.8e-07 57.8 76 34.2
Aa31LG11G3780 Aethionema arabicum HOM05D001614 ORTHO05D000988 1.2e-06 57.0 108 27.8
BolC6t39042H Brassica oleracea HOM05D001614 ORTHO05D000988 2.0e-06 56.2 117 29.9
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 2.0e-06 56.2 90 31.1
Glyma.06G245700 Glycine max HOM05D010700 ORTHO05D012225 2.6e-06 55.8 77 31.2
QL02p095319 Quercus lobata HOM05D000003 ORTHO05D000126 2.6e-06 55.8 108 32.4
TPR.G21868 Trifolium pratense HOM05D010700 ORTHO05D012225 2.6e-06 55.8 118 30.5
BcaC06g31522 Brassica carinata HOM05D001614 ORTHO05D000988 3.4e-06 55.5 109 27.5
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 3.4e-06 55.5 78 25.6
Migut.F01215 Erythranthe guttata HOM05D002073 ORTHO05D001803 3.4e-06 55.5 75 34.7
BcaC08g46074 Brassica carinata HOM05D001614 ORTHO05D000988 4.4e-06 55.1 114 28.9
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 4.4e-06 55.1 80 27.5
Lalb_Chr14g0374851 Lupinus albus HOM05D008402 ORTHO05D000988 4.4e-06 55.1 74 32.4
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 5.8e-06 54.7 80 30.0
BcaC06g31524 Brassica carinata HOM05D001614 ORTHO05D000988 7.6e-06 54.3 76 31.6
A07p33180 Brassica napus HOM05D001614 ORTHO05D000988 7.6e-06 54.3 117 29.1
A07p33190 Brassica napus HOM05D001614 ORTHO05D000988 7.6e-06 54.3 117 29.1
C07p28880 Brassica napus HOM05D001614 ORTHO05D000988 7.6e-06 54.3 76 34.2
BolC7t43423H Brassica oleracea HOM05D001614 ORTHO05D000988 7.6e-06 54.3 76 34.2
BraA07t30949Z Brassica rapa HOM05D001614 ORTHO05D000988 7.6e-06 54.3 117 29.1
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 7.6e-06 54.3 80 25.0
BcaC06g31523 Brassica carinata HOM05D001614 ORTHO05D000988 9.9e-06 53.9 109 26.6
A07p33160 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 109 28.4
C06p39440 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 32.9
BraA06t27508Z Brassica rapa HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 32.9
BraA07t30953Z Brassica rapa HOM05D001614 ORTHO05D000988 9.9e-06 53.9 117 29.1
CARHR201430 Cardamine hirsuta HOM05D001614 ORTHO05D000988 9.9e-06 53.9 78 34.6
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 9.9e-06 53.9 80 23.8


User provided reference genes

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