Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 3.3e-62 241.5 121 100.0
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 5.2e-55 217.6 121 89.3
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 5.6e-33 144.4 128 63.3
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 1.9e-17 92.8 81 51.9
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 1.7e-13 79.7 80 42.5
Glyma.05G076900 Glycine max HOM05D008402 ORTHO05D000988 4.9e-13 78.2 83 42.2
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 4.9e-13 78.2 84 41.7
Phvul.001G071800 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 6.4e-13 77.8 84 42.9
Glyma.19G071200 Glycine max HOM05D008402 ORTHO05D000988 1.1e-12 77.0 83 42.2
Phvul.001G071700 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 1.4e-12 76.6 84 42.9
QL02p094713 Quercus lobata HOM05D043071 ORTHO05D025275 1.9e-12 76.3 113 38.9
TPR.G29356 Trifolium pratense HOM05D008402 ORTHO05D000988 1.9e-12 76.3 84 41.7
Medtr1g054825 Medicago truncatula HOM05D008402 ORTHO05D000988 3.2e-12 75.5 90 38.9
Medtr1g054815 Medicago truncatula HOM05D008402 ORTHO05D000988 5.4e-12 74.7 89 39.3
Lj1g0004343 Lotus japonicus HOM05D008402 ORTHO05D000988 7.1e-12 74.3 124 31.5
MD13G1274700 Malus domestica HOM05D025175 ORTHO05D009651 7.1e-12 74.3 94 40.4
VMungo0647G1641 Vigna mungo HOM05D008402 ORTHO05D000988 7.1e-12 74.3 86 41.9
Glyma.13G031400 Glycine max HOM05D008402 ORTHO05D000988 1.6e-11 73.2 85 38.8
Medtr8g011740 Medicago truncatula HOM05D008402 ORTHO05D000988 1.6e-11 73.2 118 33.1
Lj1g0025701 Lotus japonicus HOM05D008402 ORTHO05D000988 2.7e-11 72.4 124 30.6
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.5e-11 72.0 78 38.5
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.5e-11 72.0 78 37.2
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.5e-11 72.0 80 36.2
Eucgr.E01745 Eucalyptus grandis HOM05D067861 ORTHO05D012225 3.5e-11 72.0 81 34.6
Glyma.14G153100 Glycine max HOM05D008402 ORTHO05D000988 3.5e-11 72.0 113 31.0
VMungo0647G2588 Vigna mungo HOM05D008402 ORTHO05D000988 3.5e-11 72.0 85 41.2
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 4.6e-11 71.6 91 36.3
Glyma.18G066800 Glycine max HOM05D008402 ORTHO05D000988 4.6e-11 71.6 79 38.0
Lj1g0024978 Lotus japonicus HOM05D008402 ORTHO05D000988 4.6e-11 71.6 124 31.5
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.0e-11 71.2 93 35.5
Medtr8g011770 Medicago truncatula HOM05D008402 ORTHO05D000988 7.8e-11 70.9 77 42.9
Lj1g0003999 Lotus japonicus HOM05D008402 ORTHO05D000988 1.0e-10 70.5 119 30.3
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 1.3e-10 70.1 80 38.8
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 1.3e-10 70.1 94 33.0
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.7e-10 69.7 78 37.2
Lj1g0018072 Lotus japonicus HOM05D008402 ORTHO05D000988 1.7e-10 69.7 124 29.8
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.3e-10 69.3 77 35.1
Lj1g0017901 Lotus japonicus HOM05D008402 ORTHO05D000988 3.0e-10 68.9 119 30.3
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-10 68.6 82 32.9
Eucgr.E01746 Eucalyptus grandis HOM05D067861 ORTHO05D012225 3.9e-10 68.6 72 38.9
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.9e-10 68.6 90 35.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.1e-10 68.2 82 31.7
QL05p012573 Quercus lobata HOM05D008402 ORTHO05D000988 5.1e-10 68.2 109 33.9
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 6.6e-10 67.8 91 35.2
Medtr8g011760 Medicago truncatula HOM05D008402 ORTHO05D000988 8.6e-10 67.4 77 40.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.1e-09 67.0 90 33.3
QL02p094721 Quercus lobata HOM05D043071 ORTHO05D025275 1.1e-09 67.0 109 35.8
Rhsim10G0080100 Rhododendron simsii HOM05D042140 ORTHO05D050654 1.1e-09 67.0 106 31.1
Lalb_Chr01g0019651 Lupinus albus HOM05D008402 ORTHO05D000988 1.5e-09 66.6 84 39.3
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.5e-09 66.6 127 30.7
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-09 66.2 92 33.7
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-09 66.2 97 30.9
Lj1g0006941 Lotus japonicus HOM05D008402 ORTHO05D000988 1.9e-09 66.2 119 31.1
Potri.002G229650 Populus trichocarpa HOM05D025175 ORTHO05D014166 1.9e-09 66.2 87 36.8
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.9e-09 66.2 80 35.0
TPR.G20479 Trifolium pratense HOM05D008402 ORTHO05D000988 1.9e-09 66.2 104 37.5
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 2.5e-09 65.9 77 36.4
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 2.5e-09 65.9 77 36.4
Lj1g0020175 Lotus japonicus HOM05D008402 ORTHO05D000988 3.3e-09 65.5 119 29.4
Psat5g145680 Pisum sativum HOM05D008402 ORTHO05D000988 3.3e-09 65.5 83 36.1
Cpa.g.sc34.129 Carica papaya HOM05D002073 ORTHO05D001803 5.6e-09 64.7 89 34.8
Medtr8g011880 Medicago truncatula HOM05D008402 ORTHO05D000988 5.6e-09 64.7 113 29.2
Psat4g199160 Pisum sativum HOM05D008402 ORTHO05D000988 5.6e-09 64.7 84 34.5
Potri.002G229750 Populus trichocarpa HOM05D025175 ORTHO05D014166 5.6e-09 64.7 81 38.3
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.3e-09 64.3 81 30.9
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 7.3e-09 64.3 85 35.3
Dinv34528 Davidia involucrata HOM05D008521 ORTHO05D012225 7.3e-09 64.3 85 34.1
Psat4g199200 Pisum sativum HOM05D008402 ORTHO05D000988 7.3e-09 64.3 84 34.5
Duzib168G1766 Durio zibethinus HOM05D032872 ORTHO05D025275 9.5e-09 63.9 92 35.9
Lj1g0020043 Lotus japonicus HOM05D008402 ORTHO05D000988 9.5e-09 63.9 85 35.3
Potri.002G229600 Populus trichocarpa HOM05D025175 ORTHO05D014166 9.5e-09 63.9 79 36.7
Potri.002G229700 Populus trichocarpa HOM05D025175 ORTHO05D014166 9.5e-09 63.9 79 36.7
Prupe.6G170800 Prunus persica HOM05D002073 ORTHO05D001803 9.5e-09 63.9 117 29.9
Cpa.g.sc5.35 Carica papaya HOM05D002073 ORTHO05D001803 1.2e-08 63.5 89 36.0
Thecc.10G125800 Theobroma cacao HOM05D002073 ORTHO05D001803 1.2e-08 63.5 113 29.2
Cpa.g.sc34.128 Carica papaya HOM05D002073 ORTHO05D001803 1.6e-08 63.2 89 34.8
Cpa.g.sc34.130 Carica papaya HOM05D002073 ORTHO05D001803 1.6e-08 63.2 89 34.8
Rhsim12G0147300 Rhododendron simsii HOM05D042140 ORTHO05D050654 1.6e-08 63.2 111 29.7
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.1e-08 62.8 93 31.2
Lalb_Chr14g0374851 Lupinus albus HOM05D008402 ORTHO05D000988 2.1e-08 62.8 75 37.3
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.8e-08 62.4 78 30.8
Thecc.09G158300 Theobroma cacao HOM05D032872 ORTHO05D025275 3.6e-08 62.0 115 32.2
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 4.7e-08 61.6 85 36.5
Prupe.6G170600 Prunus persica HOM05D002073 ORTHO05D001803 6.2e-08 61.2 117 28.2
Prupe.6G170700 Prunus persica HOM05D002073 ORTHO05D001803 6.2e-08 61.2 112 27.7
Prupe.6G171400 Prunus persica HOM05D002073 ORTHO05D001803 6.2e-08 61.2 112 27.7
Aa31LG11G3780 Aethionema arabicum HOM05D001614 ORTHO05D000988 8.1e-08 60.8 108 29.6
Sc02g0006870 Simmondsia chinensis HOM05D040162 ORTHO05D012045 8.1e-08 60.8 80 30.0
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.4e-07 60.1 81 27.2
Glyma.19G054100 Glycine max HOM05D008402 ORTHO05D000988 1.4e-07 60.1 119 28.6
Thecc.09G152800 Theobroma cacao HOM05D002073 ORTHO05D001803 1.4e-07 60.1 84 31.0
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.3e-07 59.3 83 32.5
Glyma.06G245700 Glycine max HOM05D010700 ORTHO05D012225 2.3e-07 59.3 88 33.0
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 2.3e-07 59.3 76 32.9
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.1e-07 58.9 80 27.5
CARHR201430 Cardamine hirsuta HOM05D001614 ORTHO05D000988 3.1e-07 58.9 78 37.2
Cpa.g.sc75.89 Carica papaya HOM05D002073 ORTHO05D001803 3.1e-07 58.9 89 31.5
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 3.1e-07 58.9 80 30.0
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 3.1e-07 58.9 85 32.9
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.0e-07 58.5 76 28.9
Migut.F01215 Erythranthe guttata HOM05D002073 ORTHO05D001803 5.2e-07 58.2 87 32.2
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 5.2e-07 58.2 80 26.2
BolC6t39042H Brassica oleracea HOM05D001614 ORTHO05D000988 6.8e-07 57.8 117 30.8
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 8.9e-07 57.4 85 34.1
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 1.2e-06 57.0 80 36.2
Lj1g0018215 Lotus japonicus HOM05D008402 ORTHO05D000988 1.2e-06 57.0 93 29.0
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 1.5e-06 56.6 81 29.6
Prupe.6G171300 Prunus persica HOM05D002073 ORTHO05D001803 1.5e-06 56.6 105 27.6
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 1.5e-06 56.6 90 31.1
Phvul.006G064400 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 2.0e-06 56.2 75 33.3
A07p33180 Brassica napus HOM05D001614 ORTHO05D000988 2.6e-06 55.8 117 29.9
A07p33190 Brassica napus HOM05D001614 ORTHO05D000988 2.6e-06 55.8 117 29.9
BraA07t30949Z Brassica rapa HOM05D001614 ORTHO05D000988 2.6e-06 55.8 117 29.9
CARHR250760 Cardamine hirsuta HOM05D001614 ORTHO05D000988 2.6e-06 55.8 105 31.4
QL11p022935 Quercus lobata HOM05D008402 ORTHO05D000988 2.6e-06 55.8 92 26.1
RcHm_v2.0_Chr5g0069271 Rosa chinensis HOM05D008521 ORTHO05D000988 2.6e-06 55.8 75 32.0
RcHm_v2.0_Chr5g0069281 Rosa chinensis HOM05D008521 ORTHO05D000988 2.6e-06 55.8 75 32.0
RcHm_v2.0_Chr5g0069291 Rosa chinensis HOM05D008521 ORTHO05D000988 2.6e-06 55.8 75 32.0
RcHm_v2.0_Chr5g0069301 Rosa chinensis HOM05D008521 ORTHO05D000988 2.6e-06 55.8 75 32.0
BraA07t30953Z Brassica rapa HOM05D001614 ORTHO05D000988 3.4e-06 55.5 117 29.9
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 3.4e-06 55.5 78 28.2
Nn1g05895 Nelumbo nucifera HOM05D008402 ORTHO05D000988 3.4e-06 55.5 122 31.1
BcaC06g31522 Brassica carinata HOM05D001614 ORTHO05D000988 4.4e-06 55.1 109 27.5
CARHR201440 Cardamine hirsuta HOM05D001614 ORTHO05D000988 5.8e-06 54.7 108 27.8
AUR62012661 Chenopodium quinoa HOM05D009994 ORTHO05D012045 5.8e-06 54.7 75 37.3
Gohir.A01G064100 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.8e-06 54.7 81 32.1
AT5G42955 Arabidopsis thaliana HOM05D001614 ORTHO05D000988 7.6e-06 54.3 114 29.8
BcaC08g46074 Brassica carinata HOM05D001614 ORTHO05D000988 7.6e-06 54.3 114 29.8
BolC6t39044H Brassica oleracea HOM05D001614 ORTHO05D000988 7.6e-06 54.3 117 29.9
Prupe.4G143200 Prunus persica HOM05D008521 ORTHO05D001803 7.6e-06 54.3 115 29.6
TPR.G21868 Trifolium pratense HOM05D010700 ORTHO05D012225 7.6e-06 54.3 118 31.4
BcaC06g31524 Brassica carinata HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 31.6
A07p33160 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 109 29.4
C06p39450 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
C06p39460 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
C06p39480 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
C06p39490 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
C06p39500 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
C06p39520 Brassica napus HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
BolC6t39045H Brassica oleracea HOM05D001614 ORTHO05D000988 9.9e-06 53.9 76 34.2
Gohir.D01G051000 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.9e-06 53.9 81 29.6
Prupe.2G086900 Prunus persica HOM05D008521 ORTHO05D001803 9.9e-06 53.9 92 35.9


User provided reference genes

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