Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 2.1e-98 362.5 193 100.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.0e-49 198.7 193 58.0
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 7.5e-48 194.5 190 58.4
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.7e-47 192.2 192 58.3
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 6.3e-47 191.4 196 58.7
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 6.3e-47 191.4 196 58.7
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 8.3e-47 191.0 193 54.9
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-46 190.3 192 58.3
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.8e-46 189.9 191 59.2
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.0e-45 186.4 190 55.8
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 2.7e-45 186.0 189 58.2
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 2.9e-44 182.6 188 59.6
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.0e-44 181.8 193 53.4
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 6.5e-44 181.4 190 55.8
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 8.5e-44 181.0 190 57.4
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.5e-43 179.5 194 55.7
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 7.2e-43 177.9 193 53.9
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 1.2e-42 177.2 184 56.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.6e-42 176.8 191 57.6
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 2.1e-42 176.4 190 55.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 4.7e-42 175.3 192 53.1
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.1e-42 174.9 178 55.1
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.0e-41 174.1 189 54.5
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.3e-41 172.9 192 53.1
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.0e-41 172.2 193 49.7
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.0e-41 172.2 207 49.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.0e-41 172.2 193 52.8
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.0e-41 172.2 183 54.1
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 6.8e-41 171.4 189 54.5
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.5e-40 170.2 193 52.8
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 2.6e-40 169.5 185 55.1
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.6e-40 169.5 190 55.3
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 7.5e-40 167.9 184 52.7
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 9.8e-40 167.5 188 54.3
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 9.8e-40 167.5 192 54.7
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-39 167.2 182 51.6
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.1e-38 164.1 187 50.8
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.4e-38 163.7 190 51.6
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.4e-38 163.7 187 52.4
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 9.1e-38 161.0 190 51.1
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.2e-37 160.6 187 53.5
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.2e-37 160.6 193 51.3
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.0e-37 159.8 190 54.2
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 2.7e-37 159.5 190 45.8
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 4.5e-37 158.7 190 43.7
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.0e-36 157.5 187 49.7
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 1.0e-36 157.5 187 50.8
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.7e-36 156.8 185 50.8
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.3e-36 156.4 187 48.1
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.9e-36 156.0 188 48.9
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.1e-35 154.1 189 48.1
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 1.9e-35 153.3 201 51.2
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 2.5e-35 152.9 187 49.2
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 3.3e-35 152.5 196 45.9
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 7.2e-35 151.4 187 48.1
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 7.2e-35 151.4 187 48.1
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.6e-34 150.2 190 48.9
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.6e-34 150.2 201 45.8
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.0e-33 147.5 194 50.0
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.4e-33 147.1 188 46.8
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 1.8e-33 146.7 192 45.8
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.3e-33 146.4 184 49.5
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 2.6e-32 142.9 206 44.2
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 5.7e-32 141.7 190 47.4
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 7.5e-32 141.4 184 49.5
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 9.8e-32 141.0 190 43.2
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.3e-31 140.6 184 49.5
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 2.2e-31 139.8 159 52.8
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 3.7e-31 139.0 152 53.3
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 3.7e-31 139.0 191 48.2
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.1e-30 137.5 169 49.7
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.4e-30 136.3 187 46.0
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.4e-30 136.3 186 44.1
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 4.1e-30 135.6 188 46.8
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 9.2e-30 134.4 187 45.5
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.6e-29 133.7 191 42.4
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.7e-29 132.9 189 46.6
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 7.8e-29 131.3 187 44.4
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.0e-28 131.0 174 47.7
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 1.3e-28 130.6 192 44.8
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 2.3e-28 129.8 192 44.8
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.1e-27 127.5 188 46.3
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.9e-27 126.7 163 47.2
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.5e-27 126.3 165 46.7
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 4.3e-27 125.6 198 41.9
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-26 124.0 193 43.5
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.8e-26 122.9 190 44.2
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.6e-26 122.5 188 44.7
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.6e-26 122.5 188 44.7
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 6.1e-26 121.7 188 43.1
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 6.1e-26 121.7 188 44.7
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 6.1e-26 121.7 188 43.1
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.4e-25 120.6 190 41.6
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.4e-25 120.6 188 42.0
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.8e-25 120.2 188 42.6
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 4.0e-25 119.0 193 41.5
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.0e-25 119.0 188 43.1
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 8.9e-25 117.9 190 42.6
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 8.9e-25 117.9 190 42.6
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-24 117.5 188 43.6
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.2e-24 117.5 188 43.6
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.2e-24 117.5 190 42.6
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.2e-24 117.5 190 44.2
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-24 117.5 202 42.6
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-24 117.1 188 42.0
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.5e-24 117.1 188 42.0
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 2.6e-24 116.3 190 42.1
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 2.6e-24 116.3 190 42.1
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 3.4e-24 115.9 188 41.5
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.3e-23 114.0 188 42.0
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 1.7e-23 113.6 188 41.0
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 2.2e-23 113.2 164 43.3
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 8.3e-23 111.3 159 43.4
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 8.3e-23 111.3 184 41.3
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.1e-22 110.9 182 40.1
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.4e-22 110.5 165 43.0
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 2.4e-22 109.8 182 38.5
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.4e-22 109.8 159 44.0
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 7.0e-22 108.2 185 41.1
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 6.0e-21 105.1 171 41.5
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 6.0e-21 105.1 161 41.6
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.3e-20 104.0 184 39.7
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.0e-20 102.8 78 62.8
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 6.6e-20 101.7 201 35.3
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.1e-19 100.9 185 38.9
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 5.6e-19 98.6 179 39.7
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 7.3e-19 98.2 185 37.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.2e-18 97.4 179 37.4
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 1.6e-18 97.1 190 36.3
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 4.7e-18 95.5 185 37.3
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 6.2e-18 95.1 185 37.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.4e-17 94.0 185 37.3
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 2.3e-17 93.2 185 36.8
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 2.3e-17 93.2 185 36.8
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 3.1e-17 92.8 185 36.8
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 3.1e-17 92.8 185 36.8
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 5.2e-17 92.0 185 36.2
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.8e-17 91.7 185 35.7
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 6.8e-17 91.7 184 34.8
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 2.0e-16 90.1 183 35.5
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.1e-14 84.3 193 33.2
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.1e-14 84.3 192 33.9
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 2.3e-12 76.6 187 33.2
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.6e-12 74.7 146 38.4
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 8.6e-12 74.7 82 48.8
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.1e-11 74.3 189 31.7
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 8.1e-10 68.2 188 32.4
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.4e-09 67.4 46 71.7
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 2.3e-09 66.6 192 28.6
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 5.2e-09 65.5 172 33.7
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 3.4e-08 62.8 188 27.7
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.4e-08 62.4 184 34.2
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 9.9e-08 61.2 182 28.0
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 2.2e-07 60.1 183 26.8
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 2.9e-07 59.7 56 50.0
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.9e-07 58.9 199 28.1
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.9e-07 58.9 163 30.7
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 8.4e-07 58.2 128 28.9
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 2.4e-06 56.6 41 68.3
HPP92_015856 Vanilla planifolia HOM05D004507 ORTHO05D004874 4.1e-06 55.8 49 51.0
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 5.4e-06 55.5 191 29.8
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 7.1e-06 55.1 66 42.4


User provided reference genes

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