Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 5.3e-149 531.2 305 100.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.7e-92 342.8 306 64.4
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.9e-90 336.7 306 63.7
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.1e-88 330.9 285 67.4
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 3.1e-88 329.3 306 65.4
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 4.0e-88 328.9 277 66.8
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.2e-87 327.4 284 65.8
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.2e-87 327.4 284 65.8
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.0e-87 326.6 306 61.4
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 2.2e-86 323.2 293 64.2
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.8e-86 322.4 284 63.0
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.2e-84 317.4 314 61.8
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 7.8e-84 314.7 306 61.4
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.5e-82 309.7 306 66.7
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 7.3e-82 308.1 311 59.8
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.6e-81 305.8 282 66.0
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 3.4e-79 299.3 309 60.2
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.9e-77 293.5 308 59.4
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.2e-77 292.4 287 57.1
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 7.1e-77 291.6 306 62.7
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 1.2e-76 290.8 306 61.4
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 2.1e-76 290.0 285 60.0
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 7.8e-76 288.1 311 61.4
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.0e-75 287.7 306 63.7
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.0e-75 287.7 306 63.7
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 5.1e-75 285.4 309 58.9
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 5.1e-75 285.4 282 59.2
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 6.6e-75 285.0 311 57.6
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 6.6e-75 285.0 307 64.5
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.9e-74 283.5 300 63.0
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 5.6e-74 282.0 263 62.7
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 9.6e-74 281.2 305 56.7
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.1e-73 280.0 308 56.8
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 2.8e-73 279.6 256 60.2
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.8e-73 279.6 287 57.5
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 3.6e-73 279.3 303 57.8
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 6.2e-73 278.5 260 64.2
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.8e-72 276.9 299 57.5
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 6.9e-72 275.0 313 58.5
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.0e-71 273.5 286 55.9
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 2.6e-71 273.1 278 57.9
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 2.6e-71 273.1 309 55.3
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.3e-70 270.8 308 55.2
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.3e-70 270.8 308 55.2
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 3.8e-70 269.2 305 52.8
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 4.9e-70 268.9 285 54.7
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 4.9e-70 268.9 274 60.6
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 4.9e-70 268.9 283 56.9
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.4e-70 268.5 308 55.2
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.2e-69 265.8 303 54.8
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 7.1e-69 265.0 290 54.8
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 7.1e-69 265.0 284 56.0
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 9.3e-69 264.6 277 55.2
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.6e-68 263.8 301 53.2
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.5e-68 262.7 274 62.4
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 3.5e-68 262.7 288 58.0
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 4.6e-68 262.3 310 56.8
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 6.0e-68 261.9 319 52.0
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 7.9e-68 261.5 296 53.7
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.0e-67 261.2 378 46.3
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.0e-67 261.2 284 55.3
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.3e-67 260.8 289 55.0
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.3e-67 260.8 311 54.7
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.3e-67 260.8 288 54.5
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.8e-67 260.4 295 52.9
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.3e-67 260.0 309 59.5
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.3e-67 260.0 309 55.0
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.3e-67 260.0 278 54.0
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 3.9e-67 259.2 267 58.4
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 3.9e-67 259.2 284 55.3
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 6.7e-67 258.5 306 52.6
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.5e-66 257.3 263 61.2
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.9e-66 256.9 280 57.1
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.9e-66 256.9 276 57.6
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 2.5e-66 256.5 314 56.4
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.5e-66 256.5 311 54.7
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 7.4e-66 255.0 280 57.1
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.8e-65 253.1 287 56.4
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.8e-65 252.3 277 53.8
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 6.2e-65 251.9 280 62.1
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 8.1e-65 251.5 249 65.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.8e-64 250.4 311 55.0
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.2e-63 247.7 256 55.5
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.5e-63 247.3 274 56.6
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 3.4e-63 246.1 249 56.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 4.5e-63 245.7 311 52.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 9.9e-63 244.6 294 50.0
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.3e-62 244.2 236 66.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.8e-62 242.7 284 55.6
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.4e-61 240.7 308 53.2
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.4e-61 240.0 308 49.4
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.4e-61 240.0 311 53.1
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 3.2e-61 239.6 286 54.2
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 5.5e-61 238.8 285 50.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.6e-60 237.3 310 52.6
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 2.7e-60 236.5 283 53.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 3.9e-59 232.6 289 52.6
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 7.4e-58 228.4 274 53.6
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 6.2e-57 225.3 316 55.4
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.8e-56 223.8 306 49.3
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 5.3e-56 222.2 292 51.7
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.7e-54 217.2 308 48.7
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-53 214.2 287 47.4
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 2.5e-53 213.4 238 59.7
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 1.6e-52 210.7 266 50.8
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 3.9e-51 206.1 311 47.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 1.9e-50 203.8 249 52.2
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 4.3e-50 202.6 264 50.0
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 1.1e-48 198.0 197 58.9
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.1e-48 198.0 253 52.6
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.4e-48 197.6 255 48.6
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-47 194.5 238 53.8
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.2e-47 194.5 238 53.8
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 2.0e-47 193.7 298 46.0
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.4e-47 193.0 310 43.2
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 5.9e-47 192.2 260 49.2
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.1e-44 183.7 169 74.0
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.7e-44 183.3 292 45.9
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 4.3e-42 176.0 156 76.3
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.8e-40 170.6 238 50.8
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 4.1e-40 169.5 186 57.5
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.4e-39 166.4 263 42.2
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 5.0e-38 162.5 238 44.1
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.9e-37 160.6 281 38.8
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.6e-36 157.5 259 40.9
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.7e-36 156.8 250 43.6
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 1.8e-35 154.1 302 35.4
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 7.4e-34 148.7 287 39.7
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 1.1e-32 144.8 230 38.7
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 3.2e-29 133.3 292 35.6
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.6e-28 131.0 293 36.9
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 3.6e-28 129.8 98 75.5
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 9.7e-26 121.7 257 36.2
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.4e-24 117.1 183 48.1
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 3.7e-17 93.2 183 41.5
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.8e-14 83.2 73 69.9
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.9e-13 80.9 76 53.9
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.6e-10 70.5 86 45.3
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 9.8e-10 68.6 108 40.7
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 7.0e-08 62.4 120 31.7
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 9.1e-08 62.0 76 51.3
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.0e-07 60.8 45 62.2
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 5.9e-07 59.3 84 42.9
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 7.7e-07 58.9 54 53.7


User provided reference genes

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