Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 3.6e-48 194.5 92 100.0
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 2.6e-38 161.8 88 80.7
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.8e-37 158.3 89 78.7
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 3.7e-37 157.9 88 78.4
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 3.7e-37 157.9 89 77.5
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 4.8e-37 157.5 89 76.4
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.4e-36 156.0 88 76.1
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 2.4e-36 155.2 89 76.4
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.4e-36 155.2 87 79.3
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.4e-36 155.2 88 76.1
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 4.1e-36 154.5 92 72.8
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 7.0e-36 153.7 88 77.3
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 7.0e-36 153.7 92 71.7
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 9.1e-36 153.3 88 75.0
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 9.1e-36 153.3 89 73.0
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.2e-35 152.9 89 75.3
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.6e-35 151.8 88 73.9
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 2.6e-35 151.8 93 74.2
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 2.6e-35 151.8 88 76.1
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.5e-35 151.4 88 75.0
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 3.5e-35 151.4 88 75.0
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 4.5e-35 151.0 88 73.9
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 4.5e-35 151.0 88 72.7
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.9e-35 150.6 88 73.9
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.9e-35 150.6 88 72.7
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 7.7e-35 150.2 89 73.0
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 7.7e-35 150.2 89 70.8
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.0e-34 149.8 88 73.9
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.3e-34 149.4 89 70.8
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.3e-34 149.4 92 71.7
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.7e-34 149.1 89 71.9
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.2e-34 148.7 87 77.0
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.2e-34 148.7 87 77.0
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 2.2e-34 148.7 88 72.7
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.8e-34 147.9 93 71.0
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 5.0e-34 147.5 89 73.0
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 5.0e-34 147.5 88 71.6
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.1e-33 146.4 89 68.5
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 1.1e-33 146.4 89 71.9
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.5e-33 146.0 89 67.4
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.5e-33 145.2 92 68.5
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 2.5e-33 145.2 86 73.3
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 3.2e-33 144.8 89 70.8
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 9.4e-33 143.3 93 68.8
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 9.4e-33 143.3 89 70.8
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.2e-32 142.9 86 70.9
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.6e-32 142.5 93 69.9
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 4.7e-32 141.0 87 67.8
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 6.1e-32 140.6 91 70.3
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 8.0e-32 140.2 89 68.5
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 8.0e-32 140.2 92 68.5
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 8.0e-32 140.2 92 68.5
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.0e-31 139.8 86 69.8
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.8e-31 139.0 88 70.5
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.8e-31 139.0 93 67.7
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.8e-31 139.0 92 67.4
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 2.3e-31 138.7 86 68.6
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 2.3e-31 138.7 89 67.4
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 4.0e-31 137.9 87 71.3
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.0e-31 137.9 89 67.4
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.0e-31 137.9 92 68.5
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 8.8e-31 136.7 89 67.4
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 8.8e-31 136.7 87 66.7
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.8e-31 136.7 89 65.2
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-30 136.3 89 65.2
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-30 136.0 89 66.3
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.5e-30 136.0 89 66.3
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 2.0e-30 135.6 88 65.9
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.0e-30 135.6 83 71.1
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 2.0e-30 135.6 92 66.3
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 2.6e-30 135.2 87 67.8
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 2.6e-30 135.2 89 67.4
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 70.5
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 82 73.2
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 70.5
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-30 134.8 88 70.5
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 4.4e-30 134.4 89 67.4
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 4.4e-30 134.4 89 66.3
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 4.4e-30 134.4 89 64.0
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 5.7e-30 134.0 89 64.0
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-30 134.0 89 64.0
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-30 134.0 89 64.0
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 5.7e-30 134.0 89 64.0
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 5.7e-30 134.0 89 64.0
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 5.7e-30 134.0 88 67.0
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 5.7e-30 134.0 89 66.3
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 5.7e-30 134.0 90 67.8
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 7.5e-30 133.7 83 69.9
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 9.7e-30 133.3 88 70.5
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 9.7e-30 133.3 89 66.3
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 9.7e-30 133.3 82 72.0
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 9.7e-30 133.3 92 66.3
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.3e-29 132.9 87 67.8
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.7e-29 132.5 88 69.3
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.7e-29 132.5 89 66.3
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 2.2e-29 132.1 87 65.5
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.8e-29 131.7 92 65.2
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.1e-28 129.8 89 62.9
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.4e-28 129.4 87 67.8
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.4e-28 129.4 89 64.0
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 3.1e-28 128.3 92 62.0
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 4.1e-28 127.9 89 62.9
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 4.1e-28 127.9 89 62.9
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 4.1e-28 127.9 89 62.9
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 4.1e-28 127.9 89 62.9
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.3e-28 127.5 88 67.0
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 7.0e-28 127.1 88 63.6
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 65.5
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.6e-27 125.9 88 64.8
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 3.5e-27 124.8 92 62.0
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 7.7e-27 123.6 92 60.9
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.7e-26 122.5 88 63.6
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.2e-26 122.1 82 61.0
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.5e-25 119.4 90 58.9
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.9e-25 119.0 87 59.8
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.1e-24 115.5 88 58.0
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 2.7e-24 115.2 88 56.8
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 5.7e-22 107.5 88 56.8
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 9.8e-22 106.7 90 55.6
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.2e-21 105.5 60 75.0
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.4e-20 102.8 64 67.2
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.3e-18 96.3 85 50.6
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 9.5e-17 90.1 60 65.0
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-16 89.7 75 52.0
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 6.1e-16 87.4 60 61.7
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.8e-15 85.9 59 61.0
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.3e-15 85.5 57 59.6
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.5e-14 82.8 59 62.7
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 5.7e-14 80.9 85 40.0
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 9.8e-14 80.1 57 63.2
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 1.2e-11 73.2 56 57.1
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 1.6e-11 72.8 44 70.5
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.6e-11 72.8 77 46.8
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.1e-09 66.6 45 62.2
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.1e-09 66.6 82 41.5
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.1e-09 66.6 82 41.5
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 3.3e-09 65.1 82 39.0
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-08 63.2 71 40.8
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-08 63.2 71 40.8
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.6e-08 62.8 82 37.8
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 3.6e-08 61.6 83 37.3
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.1e-08 60.8 82 30.5
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 8.0e-08 60.5 81 30.9
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 1.8e-07 59.3 92 37.0
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 3.0e-07 58.5 43 53.5
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 3.0e-07 58.5 43 53.5
Zm00001eb233510 Zea mays HOM05D004945 ORTHO05D005536 8.9e-07 57.0 42 59.5


User provided reference genes

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