Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.1e-108 396.4 308 100.0
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.1e-89 333.2 309 90.3
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.9e-77 293.5 303 72.9
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.8e-75 284.6 306 79.7
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 5.3e-72 275.4 303 78.5
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 7.7e-71 271.6 303 67.3
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 7.7e-71 271.6 304 77.0
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 1.4e-69 267.3 310 74.2
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.4e-69 267.3 303 78.9
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.6e-68 263.8 304 78.3
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 2.1e-68 263.5 305 77.0
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.7e-68 263.1 303 76.9
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.6e-68 262.7 305 76.7
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 1.4e-67 260.8 303 69.3
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.1e-66 257.7 306 76.8
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.5e-66 257.3 302 75.5
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.7e-66 255.4 303 72.6
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.3e-65 254.2 303 68.0
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.8e-65 253.1 303 67.7
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.8e-65 253.1 303 67.3
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 2.8e-65 253.1 303 68.0
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 6.3e-65 251.9 303 71.6
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 1.1e-64 251.1 304 69.7
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 1.8e-64 250.4 310 69.7
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.0e-64 248.4 304 75.3
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 5.9e-63 245.4 305 75.1
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 5.9e-63 245.4 305 75.4
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.0e-62 244.6 300 72.3
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.9e-62 243.0 305 75.4
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 3.8e-62 242.7 304 74.3
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 6.5e-62 241.9 300 69.3
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 1.4e-61 240.7 309 74.8
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.4e-61 240.7 303 75.6
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.9e-61 240.4 304 75.7
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 1.9e-61 240.4 303 75.2
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 2.5e-61 240.0 304 68.4
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 5.5e-61 238.8 305 73.4
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 9.4e-61 238.0 304 67.4
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 2.7e-60 236.5 309 54.4
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 2.7e-60 236.5 303 74.9
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 6.1e-60 235.3 323 72.1
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 8.0e-60 235.0 305 73.1
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 1.4e-59 234.2 305 73.4
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 1.4e-59 234.2 303 68.6
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 2.3e-59 233.4 305 73.1
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 2.3e-59 233.4 305 73.1
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 2.3e-59 233.4 305 73.1
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 2.3e-59 233.4 305 73.1
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 2.3e-59 233.4 322 71.7
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 3.9e-59 232.6 304 67.4
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 3.9e-59 232.6 304 67.4
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 3.9e-59 232.6 303 65.7
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.1e-58 231.1 305 72.8
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.1e-58 231.1 303 66.7
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.5e-58 230.7 304 67.4
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 2.6e-58 229.9 303 65.7
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.6e-58 229.9 322 69.9
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 3.3e-58 229.6 304 66.1
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 3.3e-58 229.6 304 74.0
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 4.4e-58 229.2 308 53.6
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 9.7e-58 228.0 307 69.7
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 1.3e-57 227.6 304 72.0
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 3.7e-57 226.1 306 73.2
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 4.8e-57 225.7 323 68.4
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 1.4e-56 224.2 306 70.3
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.8e-56 223.8 314 69.4
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 2.6e-55 219.9 304 72.7
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 4.5e-55 219.2 305 73.8
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 7.7e-55 218.4 305 70.8
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 1.0e-54 218.0 306 69.6
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 1.7e-54 217.2 260 77.7
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 6.5e-54 215.3 305 64.3
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 6.5e-54 215.3 305 70.2
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 8.5e-54 214.9 313 63.6
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 8.5e-54 214.9 314 62.1
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 8.5e-54 214.9 305 72.5
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.2e-53 213.0 279 70.6
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.2e-53 213.0 303 72.9
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 4.2e-53 212.6 307 69.7
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 9.4e-53 211.5 303 69.6
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 1.2e-52 211.1 305 58.4
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 1.2e-52 211.1 303 64.7
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.2e-52 211.1 304 68.8
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 2.1e-52 210.3 309 66.3
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.4e-51 207.6 303 69.0
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 2.3e-51 206.8 307 55.7
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 3.0e-51 206.5 292 71.2
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 5.2e-51 205.7 292 70.9
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 8.8e-51 204.9 309 70.2
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.0e-50 203.8 319 68.3
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 7.5e-50 201.8 309 61.8
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.4e-48 197.6 299 67.6
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 1.8e-48 197.2 310 65.5
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 5.3e-48 195.7 305 59.7
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.2e-47 194.5 302 64.2
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 2.0e-47 193.7 304 69.1
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.7e-47 193.4 284 64.4
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 4.5e-47 192.6 303 61.7
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 1.7e-46 190.7 301 60.1
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 1.7e-46 190.7 301 60.1
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 2.9e-46 189.9 304 69.1
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 8.5e-46 188.3 306 65.0
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 8.5e-46 188.3 314 63.7
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.1e-45 188.0 307 52.4
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.5e-45 187.6 159 68.6
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 3.2e-45 186.4 305 61.0
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 3.2e-45 186.4 305 61.0
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.2e-44 184.5 307 60.3
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 8.0e-44 181.8 307 65.5
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 1.8e-43 180.6 307 66.8
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 4.0e-43 179.5 306 68.3
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 5.2e-43 179.1 299 60.9
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 4.4e-42 176.0 305 63.0
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 5.7e-42 175.6 298 67.4
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 9.8e-42 174.9 306 64.7
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 1.3e-41 174.5 308 64.6
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.7e-41 174.1 314 58.0
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 1.7e-41 174.1 307 59.3
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 2.2e-41 173.7 308 66.9
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 2.8e-41 173.3 305 59.7
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 3.7e-41 172.9 290 63.8
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 1.8e-40 170.6 295 65.4
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 7.0e-40 168.7 305 62.6
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 9.1e-40 168.3 305 63.6
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.7e-39 166.8 312 62.2
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.5e-39 166.4 157 61.1
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 7.7e-39 165.2 236 77.1
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.0e-38 164.9 349 39.0
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-38 164.5 301 62.5
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.3e-38 164.5 291 66.3
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.7e-38 164.1 290 66.2
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 5.0e-38 162.5 301 64.5
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 5.0e-38 162.5 301 64.5
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 5.0e-38 162.5 278 55.0
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 6.6e-38 162.2 301 65.1
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 8.6e-38 161.8 304 50.0
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 1.9e-37 160.6 301 63.1
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.9e-37 160.6 301 63.8
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 2.5e-37 160.2 304 64.5
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 7.2e-37 158.7 290 64.1
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 9.5e-37 158.3 302 56.3
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 1.2e-36 157.9 306 65.0
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 2.8e-36 156.8 246 74.8
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 6.1e-36 155.6 304 64.5
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.0e-35 154.8 303 40.3
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.4e-35 154.5 156 61.5
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 3.0e-35 153.3 305 60.7
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 4.0e-35 152.9 158 59.5
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 8.9e-35 151.8 295 65.1
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 4.4e-34 149.4 305 54.1
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 2.2e-33 147.1 143 66.4
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 2.2e-33 147.1 143 66.4
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 2.4e-32 143.7 292 56.5
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 2.4e-32 143.7 143 65.7
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.4e-32 143.7 294 62.9
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.0e-32 142.1 155 55.5
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 1.2e-31 141.4 307 57.0
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 1.6e-31 141.0 311 39.5
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.3e-30 137.9 160 56.2
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 2.3e-30 137.1 159 56.0
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 1.2e-28 131.3 304 54.9
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 2.1e-28 130.6 304 59.5
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 3.1e-27 126.7 212 51.9
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.2e-26 124.8 300 43.3
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 1.2e-26 124.8 298 55.0
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 2.6e-26 123.6 305 51.5
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 2.6e-26 123.6 298 55.0
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 5.8e-26 122.5 305 51.1
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 5.8e-26 122.5 312 54.8
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 3.2e-24 116.7 159 54.1
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 4.1e-24 116.3 314 50.6
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 4.1e-24 116.3 314 50.6
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 4.1e-24 116.3 314 50.6
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 9.2e-24 115.2 147 53.7
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 1.3e-22 111.3 159 49.7
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.6e-22 108.6 305 51.5
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 7.3e-21 105.5 147 55.1
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 8.0e-20 102.1 148 50.7
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.4e-19 101.3 223 65.5
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 6.4e-17 92.4 77 59.7
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 2.4e-16 90.5 63 71.4
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 4.1e-16 89.7 116 56.9
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 1.2e-15 88.2 155 44.5
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 5.1e-14 82.8 108 44.4
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.1e-11 75.1 204 61.8
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 1.9e-08 64.3 157 42.0
ClCG06G013820 Citrullus lanatus HOM05D003453 ORTHO05D004154 2.1e-07 60.8 128 35.2
SEGI_36064 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 6.0e-07 59.3 79 59.5


User provided reference genes

Program Settings