Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 9.1e-131 470.3 249 100.0
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 2.8e-55 219.5 233 52.4
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 5.8e-53 211.8 233 52.4
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 4.6e-50 202.2 236 47.9
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.3e-49 200.7 242 47.5
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 1.3e-49 200.7 245 46.9
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 3.0e-49 199.5 242 45.9
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 1.1e-48 197.6 235 49.8
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 5.6e-48 195.3 239 47.3
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 7.4e-48 194.9 232 44.8
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 9.6e-48 194.5 240 48.3
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 9.6e-48 194.5 238 48.3
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.6e-47 193.7 241 47.3
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 3.7e-47 192.6 241 48.1
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 2.4e-46 189.9 241 46.5
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 2.4e-46 189.9 240 45.8
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.1e-46 189.5 244 46.7
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 1.2e-45 187.6 233 50.2
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 2.0e-45 186.8 238 48.3
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 2.6e-45 186.4 233 46.8
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 2.6e-45 186.4 248 44.4
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.4e-45 186.0 241 45.6
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.4e-45 186.0 233 45.5
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 3.4e-45 186.0 226 47.8
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 4.5e-45 185.7 232 47.8
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 1.7e-44 183.7 227 46.7
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 4.9e-44 182.2 303 40.6
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 3.2e-43 179.5 226 46.0
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 9.3e-43 177.9 232 43.1
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 1.2e-42 177.6 231 47.6
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 2.1e-42 176.8 228 47.8
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 2.1e-42 176.8 232 47.8
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 4.6e-42 175.6 232 46.1
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 1.3e-41 174.1 205 46.3
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 3.9e-41 172.6 241 41.5
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 6.7e-41 171.8 218 47.7
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 2.5e-40 169.9 239 41.4
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 3.3e-40 169.5 227 46.3
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 7.4e-40 168.3 228 43.0
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 9.7e-40 167.9 243 44.0
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.3e-39 167.5 228 44.3
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.6e-39 167.2 224 46.9
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.6e-39 167.2 236 42.4
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 2.8e-39 166.4 240 44.2
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 3.7e-39 166.0 229 45.4
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 6.3e-39 165.2 211 46.0
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 1.1e-38 164.5 254 42.1
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 1.8e-38 163.7 230 45.2
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 2.4e-38 163.3 239 41.8
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 2.4e-38 163.3 187 49.2
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 3.1e-38 162.9 233 41.6
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 5.3e-38 162.2 239 41.4
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 9.0e-38 161.4 211 46.9
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 1.2e-37 161.0 238 39.5
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 1.5e-37 160.6 240 42.9
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.6e-37 159.8 240 42.9
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 3.4e-37 159.5 206 47.6
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 3.4e-37 159.5 136 60.3
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 4.5e-37 159.1 240 42.9
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 3.8e-36 156.0 233 41.6
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 8.5e-36 154.8 231 42.4
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.1e-35 154.5 238 39.9
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 1.4e-35 154.1 240 37.9
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 1.4e-35 154.1 238 42.9
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.2e-35 152.9 264 40.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 4.2e-35 152.5 234 38.5
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 4.2e-35 152.5 266 39.1
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.6e-34 150.6 164 49.4
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 2.7e-34 149.8 143 53.8
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 3.6e-34 149.4 210 42.9
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 6.1e-34 148.7 165 50.9
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.8e-33 147.1 264 39.8
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 5.1e-33 145.6 182 47.8
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 2.5e-32 143.3 182 46.2
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 2.5e-32 143.3 179 50.8
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 4.3e-32 142.5 244 40.2
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 5.7e-32 142.1 177 46.3
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 7.4e-32 141.7 294 33.0
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 9.7e-32 141.4 242 36.8
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 1.7e-31 140.6 261 38.7
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 6.9e-30 135.2 136 52.9
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 2.6e-29 133.3 338 30.8
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 6.5e-28 128.6 130 53.1
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 1.9e-27 127.1 118 55.1
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.6e-26 124.0 188 43.1
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 1.8e-25 120.6 251 36.3
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.0e-25 119.8 221 39.4
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.5e-24 117.5 295 32.2
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 4.4e-24 115.9 219 38.4
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 9.7e-24 114.8 215 35.8
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 1.1e-22 111.3 238 36.6
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 1.8e-22 110.5 138 44.9
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 3.1e-22 109.8 135 45.2
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 5.3e-22 109.0 308 30.2
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 1.1e-19 101.3 226 33.2
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 2.5e-19 100.1 142 40.8
vmacro02927 Vaccinium macrocarpon HOM05D007204 ORTHO05D008593 4.7e-18 95.9 203 36.5
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.1e-16 91.3 132 41.7
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.0e-12 78.2 122 39.3
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 1.0e-12 78.2 122 39.3
Ca_05090_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 4.8e-07 59.3 85 41.2
Ca_14995_v3 Cicer arietinum L. HOM05D007204 ORTHO05D008593 4.8e-07 59.3 85 41.2
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 6.3e-07 58.9 63 47.6
TPR.G444 Trifolium pratense HOM05D007204 ORTHO05D008593 1.8e-06 57.4 48 58.3


User provided reference genes

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