Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03968 Eucalyptus grandis HOM05D001578 ORTHO05D001207 3.9e-57 224.6 113 100.0
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 5.4e-22 107.8 112 46.4
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.9e-20 101.7 112 43.8
Potri.008G102600 Populus trichocarpa HOM05D001578 ORTHO05D001207 3.9e-20 101.7 112 45.5
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 9.5e-19 97.1 111 43.2
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.2e-18 96.7 113 42.5
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 1.2e-18 96.7 104 42.3
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.6e-18 96.3 111 42.3
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 1.6e-18 96.3 111 43.2
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 2.8e-18 95.5 107 44.9
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 3.6e-18 95.1 112 42.0
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 3.6e-18 95.1 113 42.5
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 4.7e-18 94.7 113 41.6
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.7e-18 94.7 111 41.4
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 8.0e-18 94.0 110 44.5
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 1.4e-17 93.2 112 43.8
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 2.3e-17 92.4 113 42.5
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 4.0e-17 91.7 111 39.6
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 8.9e-17 90.5 113 42.5
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 8.9e-17 90.5 110 41.8
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 1.2e-16 90.1 113 41.6
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 1.2e-16 90.1 107 47.7
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 2.0e-16 89.4 111 39.6
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 2.0e-16 89.4 111 39.6
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 2.0e-16 89.4 113 40.7
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 7.5e-16 87.4 114 40.4
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 9.8e-16 87.0 113 39.8
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 1.3e-15 86.7 113 40.7
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 1.3e-15 86.7 113 40.7
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 1.7e-15 86.3 113 39.8
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 2.2e-15 85.9 113 39.8
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.9e-15 85.5 113 38.1
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 2.9e-15 85.5 106 42.5
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 3.7e-15 85.1 109 41.3
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 3.7e-15 85.1 107 44.9
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 3.7e-15 85.1 113 42.5
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 4.9e-15 84.7 113 39.8
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 6.4e-15 84.3 113 38.1
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.1e-14 83.6 110 40.0
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.1e-14 83.6 110 40.0
BcaB04g20863 Brassica carinata HOM05D001578 ORTHO05D001207 1.9e-14 82.8 117 38.5
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 3.2e-14 82.0 107 41.1
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.4e-14 81.3 114 40.4
Lj4g0021583 Lotus japonicus HOM05D001578 ORTHO05D001207 5.4e-14 81.3 113 38.9
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 7.0e-14 80.9 114 40.4
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 7.0e-14 80.9 114 40.4
BcaB04g18931 Brassica carinata HOM05D001578 ORTHO05D001207 1.2e-13 80.1 115 36.5
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 1.2e-13 80.1 117 37.6
BraA01t03778Z Brassica rapa HOM05D001578 ORTHO05D001207 1.2e-13 80.1 117 37.6
CARHR092380 Cardamine hirsuta HOM05D001578 ORTHO05D001207 2.7e-13 79.0 117 37.6
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 2.7e-13 79.0 111 37.8
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 3.5e-13 78.6 113 40.7
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 3.5e-13 78.6 111 40.5
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 3.5e-13 78.6 114 37.7
BolC1t04679H Brassica oleracea HOM05D001578 ORTHO05D001207 4.6e-13 78.2 117 36.8
BcaC01g03785 Brassica carinata HOM05D001578 ORTHO05D001207 6.0e-13 77.8 115 33.9
C03p48660 Brassica napus HOM05D001578 ORTHO05D001207 6.0e-13 77.8 115 33.9
Sp3g15350 Schrenkiella parvula HOM05D001578 ORTHO05D001207 6.0e-13 77.8 117 37.6
BraA03t13159Z Brassica rapa HOM05D001578 ORTHO05D001207 1.0e-12 77.0 115 33.9
A03p40090 Brassica napus HOM05D001578 ORTHO05D001207 1.3e-12 76.6 115 33.9
Eucgr.B03967 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.3e-12 76.6 113 40.7
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 1.3e-12 76.6 113 38.9
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.7e-12 76.3 113 36.3
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 1.7e-12 76.3 113 38.1
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 5.0e-12 74.7 110 35.5
Carub.0003s1687 Capsella rubella HOM05D001578 ORTHO05D001207 1.1e-11 73.6 117 35.0
Thhalv10021610m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 1.1e-11 73.6 117 35.0
AT3G17130 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 1.5e-11 73.2 117 35.9
BcaC09g48669 Brassica carinata HOM05D001578 ORTHO05D001207 3.3e-11 72.0 117 35.9
AL3G30110 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 7.3e-11 70.9 115 35.7
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 1.6e-10 69.7 115 36.5
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 6.2e-10 67.8 104 35.6
Aa31LG8G4140 Aethionema arabicum HOM05D001578 ORTHO05D001207 1.4e-09 66.6 115 31.3
Ca_00963_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.3e-09 65.9 84 41.7
C01p47110 Brassica napus HOM05D001578 ORTHO05D001207 4.0e-09 65.1 103 35.9
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 5.2e-09 64.7 115 34.8
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 5.2e-09 64.7 110 36.4
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 1.5e-08 63.2 110 34.5
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.5e-08 63.2 110 34.5
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 3.4e-08 62.0 109 34.9
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 4.4e-08 61.6 110 32.7
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 5.8e-08 61.2 110 33.6
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 7.5e-08 60.8 110 33.6
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 1.7e-07 59.7 110 36.4
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.2e-07 59.3 110 31.8
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 2.2e-07 59.3 110 31.8
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 2.2e-07 59.3 110 32.7
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.2e-07 59.3 110 30.9
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 3.7e-07 58.5 110 31.8
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.7e-07 58.5 110 35.5
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 6.4e-07 57.8 103 31.1
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.1e-06 57.0 116 32.8
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 1.1e-06 57.0 110 31.8
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 1.1e-06 57.0 112 29.5
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 1.1e-06 57.0 110 32.7
Aqoxy3G02557 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 1.4e-06 56.6 113 36.3
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 1.4e-06 56.6 115 36.5
Phvul.003G116500 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.4e-06 56.6 110 25.5
Potri.001G288500 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.9e-06 56.2 88 33.0
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.2e-06 55.5 108 34.3
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 3.2e-06 55.5 110 34.5
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 5.4e-06 54.7 111 33.3
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 5.4e-06 54.7 108 34.3
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 5.4e-06 54.7 108 34.3
Hma1.2p1_0078F.1_g039850 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 5.4e-06 54.7 108 33.3
Hma1.2p1_1400F.1_g280915 Hydrangea macrophylla HOM05D001578 ORTHO05D001207 5.4e-06 54.7 108 33.3
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 5.4e-06 54.7 110 34.5
Thecc.04G304900 Theobroma cacao HOM05D001578 ORTHO05D001207 7.1e-06 54.3 103 28.2
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 9.2e-06 53.9 104 29.8


User provided reference genes

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