Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.9e-154 548.5 273 100.0
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 9.1e-100 367.5 274 70.1
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 7.7e-99 364.4 247 72.9
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 1.5e-97 360.1 274 68.2
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 1.6e-96 356.7 273 67.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 2.1e-96 356.3 240 71.7
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.6e-96 355.5 249 71.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.1e-96 354.8 270 66.7
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.4e-95 353.6 273 65.2
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.4e-95 353.6 237 73.4
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.8e-95 353.2 274 65.0
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 8.8e-95 350.9 268 66.4
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 4.4e-94 348.6 281 64.4
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.7e-94 348.2 271 65.7
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 9.7e-94 347.4 234 74.4
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 9.7e-94 347.4 262 68.3
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 3.7e-93 345.5 264 65.5
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 6.3e-93 344.7 272 65.1
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.1e-92 340.9 257 67.7
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 1.2e-91 340.5 240 70.4
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 4.5e-91 338.6 274 64.2
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 7.7e-91 337.8 272 64.7
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.0e-90 337.4 271 64.2
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 1.0e-90 337.4 273 64.5
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 2.2e-90 336.3 239 68.6
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.8e-90 335.5 239 68.6
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 6.5e-90 334.7 238 68.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 8.5e-90 334.3 225 72.4
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.1e-89 334.0 273 63.0
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 2.5e-89 332.8 240 67.9
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.7e-88 329.3 275 62.2
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 4.7e-88 328.6 265 66.0
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.7e-88 328.6 239 67.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 6.1e-88 328.2 267 61.8
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.8e-87 326.6 273 61.2
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 2.3e-87 326.2 232 69.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.0e-87 325.5 245 66.5
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 4.0e-87 325.5 244 66.4
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 8.8e-87 324.3 271 62.0
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 2.0e-86 323.2 244 66.0
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-86 323.2 273 60.8
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 4.4e-86 322.0 235 67.2
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 4.4e-86 322.0 244 65.6
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 5.7e-86 321.6 244 65.2
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 7.5e-86 321.2 273 60.4
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 7.5e-86 321.2 240 65.4
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.3e-85 320.5 235 66.8
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 6.3e-85 318.2 274 62.8
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.8e-84 316.6 242 66.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 4.1e-84 315.5 255 63.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 7.0e-84 314.7 266 63.5
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.6e-83 313.5 232 65.1
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 2.0e-83 313.2 237 65.0
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.3e-82 309.7 242 62.8
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.9e-82 309.3 242 63.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.9e-82 309.3 242 63.2
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 6.6e-82 308.1 242 62.4
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 6.6e-82 308.1 242 62.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 6.6e-82 308.1 238 62.6
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 8.6e-82 307.8 242 62.8
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 3.3e-81 305.8 242 62.8
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.3e-81 305.8 242 63.2
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.2e-80 303.9 242 62.0
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.2e-80 303.9 242 62.0
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.2e-80 303.9 245 63.7
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 1.2e-80 303.9 223 64.6
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.6e-80 303.5 242 62.0
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.1e-80 303.1 235 63.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 2.8e-80 302.8 274 56.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 4.7e-80 302.0 238 61.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.8e-79 300.1 242 61.2
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.8e-79 300.1 273 58.6
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 5.2e-79 298.5 242 62.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 5.2e-79 298.5 269 57.6
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.9e-79 297.7 273 58.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 8.9e-79 297.7 261 59.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.0e-78 296.6 238 61.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 7.5e-78 294.7 273 56.8
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 1.7e-77 293.5 273 56.4
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 1.7e-74 283.5 211 68.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 2.3e-74 283.1 238 59.7
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.9e-74 282.3 224 64.3
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-73 280.8 207 66.7
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 7.3e-73 278.1 262 54.6
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 3.1e-71 272.7 198 70.2
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.5e-70 270.4 198 70.2
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 5.8e-70 268.5 221 61.1
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 6.4e-69 265.0 186 71.5
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.4e-68 263.1 273 53.1
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.4e-68 261.9 222 60.8
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.6e-67 260.4 236 59.3
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.7e-67 259.6 245 55.9
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.1e-65 254.2 195 64.1
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 3.3e-65 252.7 219 59.4
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 9.5e-65 251.1 289 48.4
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.1e-64 250.0 238 52.5
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 4.0e-63 245.7 245 50.2
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-60 236.5 187 62.0
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.1e-60 235.7 233 56.2
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.0e-58 229.6 181 62.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-52 209.9 234 51.7
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.0e-50 204.5 160 64.4
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 4.7e-48 195.7 124 75.8
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-46 189.5 222 50.5
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 6.0e-43 178.7 145 61.4
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 1.0e-42 177.9 122 68.0
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.4e-38 162.5 177 49.2
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 2.9e-37 159.8 268 36.2
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 2.7e-35 153.3 153 54.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-32 143.3 125 56.8
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-31 140.6 258 39.5
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-27 127.9 125 55.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.5e-27 126.3 116 55.2
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.5e-27 126.3 66 87.9
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.6e-25 119.0 80 70.0
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.7e-24 116.3 86 66.3
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.5e-22 110.9 74 68.9
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-22 110.5 103 52.4
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-19 100.1 71 70.4
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.0e-19 99.0 116 48.3
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.0e-18 98.2 105 53.3
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-18 97.8 137 45.3
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.4e-17 92.0 69 59.4
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 2.4e-15 87.0 82 47.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 2.6e-14 83.6 92 48.9
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-13 80.5 87 50.6
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.9e-13 80.1 99 44.4
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 2.5e-12 77.0 95 43.2
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-11 74.3 87 42.5
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.9e-10 69.7 161 31.7
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-09 67.4 145 29.7
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 1.5e-06 57.8 41 68.3
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-06 57.0 88 40.9
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.0e-05 55.1 40 70.0


User provided reference genes

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