Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 3.5e-53 211.5 113 100.0
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 7.7e-37 157.1 119 74.8
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 8.5e-36 153.7 116 75.9
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 5.5e-35 151.0 118 73.7
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.7e-34 147.9 117 72.6
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 3.0e-33 145.2 114 71.1
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 6.8e-33 144.1 120 68.3
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 8.8e-33 143.7 121 69.4
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.5e-32 142.9 116 68.1
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.0e-32 142.5 120 70.8
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 2.6e-32 142.1 117 71.8
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.4e-32 141.7 117 68.4
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 4.4e-32 141.4 110 71.8
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 9.8e-32 140.2 120 68.3
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.3e-31 139.8 116 71.6
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 1.3e-31 139.8 119 69.7
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 1.3e-31 139.8 115 72.2
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 3.7e-31 138.3 118 69.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 3.7e-31 138.3 121 67.8
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 8.3e-31 137.1 117 68.4
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 1.4e-30 136.3 117 67.5
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.8e-30 136.0 115 67.8
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.4e-30 135.6 118 69.5
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 2.4e-30 135.6 117 68.4
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.1e-30 135.2 117 65.8
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 3.1e-30 135.2 116 68.1
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 3.1e-30 135.2 116 68.1
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 7.0e-30 134.0 117 67.5
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 9.2e-30 133.7 118 65.3
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 9.2e-30 133.7 117 67.5
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.6e-29 132.9 116 67.2
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.0e-29 132.5 117 64.1
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 2.0e-29 132.5 119 65.5
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.7e-29 132.1 117 67.5
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 3.5e-29 131.7 118 66.1
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 3.5e-29 131.7 120 65.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.5e-29 131.7 120 65.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.5e-29 131.7 115 67.8
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.5e-29 131.3 119 63.9
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.5e-29 131.3 119 64.7
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 4.5e-29 131.3 121 65.3
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 5.9e-29 131.0 119 65.5
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 5.9e-29 131.0 116 65.5
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 5.9e-29 131.0 117 67.5
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.0e-28 130.2 114 68.4
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.3e-28 129.8 120 64.2
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.3e-28 129.8 121 64.5
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.7e-28 129.4 102 70.6
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 2.9e-28 128.6 120 63.3
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.8e-28 128.3 117 65.8
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.0e-28 127.9 119 64.7
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 5.0e-28 127.9 118 65.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 6.6e-28 127.5 121 63.6
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 6.6e-28 127.5 121 63.6
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 8.6e-28 127.1 113 65.5
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.6e-28 127.1 117 63.2
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 1.1e-27 126.7 121 66.1
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 1.1e-27 126.7 121 66.1
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.1e-27 126.7 116 64.7
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.5e-27 126.3 118 62.7
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.5e-27 126.3 113 68.1
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.9e-27 125.9 118 62.7
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.3e-27 125.2 121 62.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 4.3e-27 124.8 119 65.5
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 4.3e-27 124.8 119 64.7
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 5.6e-27 124.4 119 63.9
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 9.5e-27 123.6 120 61.7
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 9.5e-27 123.6 125 62.4
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.1e-26 122.5 119 62.2
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 2.8e-26 122.1 121 63.6
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.0e-25 118.6 113 61.9
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.0e-25 118.2 117 59.8
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 5.2e-25 117.9 121 61.2
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 6.8e-25 117.5 113 61.1
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 8.9e-25 117.1 125 60.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 8.9e-25 117.1 113 62.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 1.2e-24 116.7 129 58.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 2.0e-24 115.9 114 64.0
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 2.0e-24 115.9 120 60.8
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 3.4e-24 115.2 117 62.4
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 3.4e-24 115.2 117 62.4
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 3.4e-24 115.2 117 62.4
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 3.4e-24 115.2 117 59.0
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 4.4e-24 114.8 119 59.7
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.4e-24 114.8 118 60.2
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 7.5e-24 114.0 117 59.0
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 9.8e-24 113.6 115 61.7
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 9.8e-24 113.6 120 60.0
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 1.3e-23 113.2 115 62.6
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 1.3e-23 113.2 115 62.6
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 1.3e-23 113.2 112 58.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 2.2e-23 112.5 119 56.3
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.9e-23 112.1 117 58.1
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.9e-23 112.1 115 57.4
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 3.7e-23 111.7 118 59.3
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 3.7e-23 111.7 121 60.3
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.4e-23 110.9 104 64.4
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 9.2e-22 107.1 117 56.4
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 9.2e-22 107.1 117 56.4
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 9.2e-22 107.1 117 56.4
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.2e-21 106.7 116 56.9
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-21 106.3 111 55.0
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 2.0e-21 105.9 111 54.1
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 5.9e-21 104.4 153 48.4
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 7.8e-21 104.0 120 54.2
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.0e-20 103.6 119 52.9
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 2.3e-20 102.4 123 51.2
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 3.0e-20 102.1 114 53.5
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 3.9e-20 101.7 114 55.3
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 5.0e-20 101.3 117 54.7
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 8.6e-20 100.5 113 54.0
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-19 99.8 118 53.4
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 4.3e-19 98.2 120 52.5
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 4.3e-19 98.2 119 52.1
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 4.7e-18 94.7 120 51.7
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 8.0e-18 94.0 113 54.9
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 8.0e-18 94.0 120 51.7
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.4e-17 93.2 112 51.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 6.8e-17 90.9 123 48.8
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 8.9e-17 90.5 85 63.5
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 4.4e-16 88.2 105 52.4
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 2.9e-15 85.5 87 57.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 6.4e-15 84.3 67 74.6
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 8.3e-15 84.0 87 56.3
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.9e-14 82.8 120 47.5
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 3.2e-14 82.0 88 58.0
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 3.2e-14 82.0 111 51.4
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 4.1e-14 81.6 117 46.2
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 7.0e-14 80.9 101 50.5
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 9.2e-14 80.5 83 56.6
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 9.2e-14 80.5 82 57.3
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.6e-13 79.7 108 50.0
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 6.0e-13 77.8 72 61.1
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.8e-13 77.4 83 57.8
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.1e-11 73.6 79 57.0
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.3e-11 71.6 79 55.7
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.3e-11 71.6 70 61.4
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 4.3e-11 71.6 70 61.4
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.6e-10 69.7 79 55.7
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.6e-10 69.7 47 78.7
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.4e-09 66.6 71 56.3
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.1e-09 65.5 101 42.6
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.2e-08 63.5 195 32.8
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.4e-08 62.0 84 53.6
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.4e-06 55.8 117 36.8
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 3.2e-06 55.5 34 85.3


User provided reference genes

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