Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 2.0e-104 382.5 196 100.0
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.2e-47 193.0 189 55.6
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 2.9e-47 192.6 183 55.2
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 3.8e-47 192.2 189 55.0
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 6.4e-47 191.4 188 55.9
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 8.4e-47 191.0 189 57.1
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 6.0e-45 184.9 190 53.7
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 5.1e-44 181.8 188 52.7
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 5.1e-44 181.8 191 52.9
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 5.1e-44 181.8 192 52.1
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 5.1e-44 181.8 183 53.6
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 5.1e-44 181.8 184 53.8
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.9e-43 179.9 192 53.6
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 1.9e-43 179.9 187 55.1
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 1.9e-43 179.9 183 52.5
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 3.3e-43 179.1 187 50.8
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 9.6e-43 177.6 189 53.4
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 9.6e-43 177.6 184 52.2
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 9.6e-43 177.6 184 52.7
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 1.6e-42 176.8 188 53.7
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 1.6e-42 176.8 187 51.9
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.6e-42 176.8 187 51.9
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 2.1e-42 176.4 185 53.0
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 4.8e-42 175.3 190 51.1
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 4.8e-42 175.3 194 51.5
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 8.1e-42 174.5 189 54.0
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 8.1e-42 174.5 189 50.8
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 1.1e-41 174.1 193 51.3
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 1.1e-41 174.1 190 50.0
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 1.4e-41 173.7 190 53.2
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.8e-41 173.3 188 50.0
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 1.8e-41 173.3 188 50.0
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 1.8e-41 173.3 190 50.0
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 5.3e-41 171.8 191 53.4
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 5.3e-41 171.8 188 50.0
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 5.3e-41 171.8 200 50.0
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 9.0e-41 171.0 184 52.2
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 1.2e-40 170.6 190 49.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 2.0e-40 169.9 183 48.6
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.0e-40 169.9 174 53.4
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 3.4e-40 169.1 192 49.5
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 3.4e-40 169.1 188 51.6
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 3.4e-40 169.1 188 51.6
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 4.5e-40 168.7 188 50.0
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 5.8e-40 168.3 190 50.5
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 7.6e-40 167.9 188 51.6
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 9.9e-40 167.5 188 51.6
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 9.9e-40 167.5 185 51.4
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 9.9e-40 167.5 179 50.8
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 1.3e-39 167.2 184 50.5
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 1.7e-39 166.8 180 52.2
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 2.2e-39 166.4 185 53.5
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 2.2e-39 166.4 189 52.4
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 2.2e-39 166.4 196 48.0
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 2.9e-39 166.0 193 50.3
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 2.9e-39 166.0 195 47.2
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 3.8e-39 165.6 200 48.5
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 4.9e-39 165.2 185 53.0
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.4e-38 163.7 196 50.0
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 2.4e-38 162.9 192 49.0
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 7.1e-38 161.4 185 50.3
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 1.6e-37 160.2 195 44.6
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 2.1e-37 159.8 182 48.9
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 2.1e-37 159.8 195 47.2
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 6.0e-37 158.3 195 44.1
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 7.9e-37 157.9 186 45.7
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 1.8e-36 156.8 203 44.3
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 1.8e-36 156.8 189 46.0
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.0e-36 156.0 181 49.2
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 3.0e-36 156.0 193 47.2
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 3.0e-36 156.0 196 47.4
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 3.9e-36 155.6 193 48.2
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 6.7e-36 154.8 191 47.1
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 8.7e-36 154.5 185 48.1
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 1.1e-35 154.1 188 45.2
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.5e-35 153.7 195 45.1
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 7.4e-35 151.4 190 44.7
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 9.6e-35 151.0 198 44.4
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.3e-34 150.6 192 44.3
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 1.3e-34 150.6 181 46.4
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 1.6e-34 150.2 180 45.0
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 3.7e-34 149.1 196 45.9
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 4.8e-34 148.7 185 45.9
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 4.0e-33 145.6 192 44.8
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 5.3e-33 145.2 196 42.3
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 5.3e-33 145.2 194 44.8
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 2.6e-32 142.9 194 46.4
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 3.4e-32 142.5 193 44.6
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 3.4e-32 142.5 196 46.4
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 1.7e-31 140.2 193 41.5
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.2e-31 139.8 204 44.6
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.9e-30 136.7 192 40.6
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 2.5e-30 136.3 192 41.7
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 3.2e-30 136.0 194 41.8
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 9.3e-30 134.4 178 46.1
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 3.5e-29 132.5 175 41.7
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 3.5e-29 132.5 187 43.9
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 7.9e-29 131.3 190 41.1
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.0e-28 131.0 196 39.8
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.0e-28 129.4 194 45.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.5e-27 127.1 196 42.3
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.9e-27 126.7 187 42.2
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 3.3e-27 125.9 196 39.8
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 4.3e-27 125.6 196 42.3
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 4.3e-27 125.6 196 42.3
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 4.3e-27 125.6 190 40.0
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 7.4e-27 124.8 196 39.3
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 9.6e-27 124.4 192 41.7
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 1.6e-26 123.6 181 41.4
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.1e-26 123.2 180 42.2
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 2.8e-26 122.9 188 41.0
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 6.2e-26 121.7 181 41.4
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.1e-25 120.9 198 41.9
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.8e-25 120.2 187 40.1
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 2.4e-25 119.8 180 41.7
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 3.1e-25 119.4 147 46.9
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 4.0e-25 119.0 181 40.3
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 4.0e-25 119.0 196 37.2
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 5.3e-25 118.6 183 38.3
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 6.9e-25 118.2 192 39.1
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 6.9e-25 118.2 192 39.1
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 9.0e-25 117.9 196 36.7
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 9.0e-25 117.9 140 48.6
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 1.5e-24 117.1 192 38.5
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 2.0e-24 116.7 196 36.7
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 3.4e-24 115.9 196 36.7
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 7.6e-24 114.8 135 45.9
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.3e-23 114.0 193 36.3
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 3.8e-23 112.5 196 36.7
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 1.1e-22 110.9 186 40.3
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.5e-22 109.8 141 46.8
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 5.7e-19 98.6 159 36.5
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 7.4e-19 98.2 95 52.6
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 1.3e-18 97.4 114 43.9
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 1.8e-17 93.6 109 55.0
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 3.1e-17 92.8 192 33.9
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 9.0e-17 91.3 202 35.1
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.4e-14 84.0 115 45.2
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 1.2e-13 80.9 100 44.0
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.4e-12 77.4 211 30.3
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 2.0e-11 73.6 70 52.9
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 2.5e-11 73.2 196 30.1
Os02g0535300 Oryza sativa ssp. japonica HOM05D005110 ORTHO05D006074 2.5e-11 73.2 199 33.2
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 4.3e-11 72.4 196 29.1
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 1.1e-09 67.8 223 30.5


User provided reference genes

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