Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 2.3e-78 295.4 143 100.0
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 4.8e-60 234.6 144 75.7
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 4.8e-60 234.6 141 75.9
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 3.1e-59 231.9 144 75.7
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 4.1e-59 231.5 143 76.2
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 2.6e-58 228.8 151 74.2
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 1.0e-57 226.9 145 76.6
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 1.0e-57 226.9 145 76.6
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 1.0e-57 226.9 145 76.6
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 1.3e-57 226.5 151 71.5
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 2.9e-57 225.3 151 74.8
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 2.9e-57 225.3 144 74.3
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 3.8e-57 224.9 149 72.5
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 6.5e-57 224.2 146 73.3
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 1.1e-56 223.4 143 77.6
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 1.1e-56 223.4 146 74.0
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.5e-56 223.0 144 73.6
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.5e-56 223.0 144 72.9
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 1.5e-56 223.0 149 73.2
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 2.5e-56 222.2 150 72.0
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 3.2e-56 221.9 150 72.0
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 4.2e-56 221.5 143 72.0
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 4.2e-56 221.5 143 72.0
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 4.2e-56 221.5 150 70.7
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 4.2e-56 221.5 150 72.0
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.2e-56 221.5 144 72.9
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 5.5e-56 221.1 142 70.4
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 5.5e-56 221.1 142 70.4
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 5.5e-56 221.1 149 69.8
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 9.4e-56 220.3 138 71.7
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 9.4e-56 220.3 143 71.3
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 9.4e-56 220.3 143 71.3
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 9.4e-56 220.3 143 71.3
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 9.4e-56 220.3 144 75.0
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 1.2e-55 219.9 143 72.0
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 1.2e-55 219.9 151 70.9
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 1.2e-55 219.9 145 76.6
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 1.6e-55 219.5 150 70.7
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 2.1e-55 219.2 139 72.7
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 2.1e-55 219.2 150 70.7
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 2.1e-55 219.2 149 70.5
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 2.7e-55 218.8 143 71.3
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 2.7e-55 218.8 143 71.3
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 4.7e-55 218.0 150 68.7
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 6.1e-55 217.6 148 70.9
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 8.0e-55 217.2 143 69.9
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 8.0e-55 217.2 143 69.9
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 8.0e-55 217.2 143 69.9
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.0e-54 216.9 146 70.5
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 1.4e-54 216.5 143 75.5
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.4e-54 216.5 145 74.5
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 2.3e-54 215.7 145 71.0
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 3.0e-54 215.3 143 69.2
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 3.0e-54 215.3 137 75.2
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.0e-54 215.3 146 69.9
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 5.2e-54 214.5 145 71.7
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 8.8e-54 213.8 132 71.2
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 8.8e-54 213.8 144 68.8
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 1.2e-53 213.4 118 78.0
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 1.2e-53 213.4 139 71.9
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 2.0e-53 212.6 144 70.8
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 2.6e-53 212.2 144 71.5
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 3.3e-53 211.8 140 70.7
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 4.4e-53 211.5 144 70.1
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 5.7e-53 211.1 143 69.9
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 5.7e-53 211.1 144 70.8
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 7.5e-53 210.7 144 70.8
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 9.7e-53 210.3 148 70.9
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 9.7e-53 210.3 137 74.5
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 9.7e-53 210.3 145 72.4
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 1.3e-52 209.9 174 59.8
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 3.7e-52 208.4 145 71.7
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 4.8e-52 208.0 147 73.5
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 6.3e-52 207.6 145 69.0
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 1.1e-51 206.8 145 71.0
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 1.8e-51 206.1 146 67.8
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 2.4e-51 205.7 146 65.8
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 5.3e-51 204.5 141 68.8
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 5.3e-51 204.5 146 67.1
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 9.1e-51 203.8 143 69.2
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.2e-50 203.4 143 68.5
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 1.6e-50 203.0 132 69.7
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 4.5e-50 201.4 146 71.2
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 7.7e-50 200.7 120 78.3
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 1.0e-49 200.3 114 77.2
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 1.0e-49 200.3 145 69.0
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 1.3e-49 199.9 146 69.9
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 1.7e-49 199.5 114 75.4
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 1.7e-49 199.5 142 68.3
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.9e-49 198.7 146 69.2
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 3.8e-49 198.4 146 70.5
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.8e-49 198.4 146 69.2
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 6.5e-49 197.6 143 66.4
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 1.1e-48 196.8 142 66.2
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.5e-48 196.4 141 68.1
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 1.2e-47 193.4 147 64.6
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 2.1e-47 192.6 142 66.2
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 8.0e-47 190.7 144 64.6
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 5.2e-46 188.0 144 63.9
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 8.8e-46 187.2 113 72.6
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 1.5e-45 186.4 118 71.2
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.3e-44 183.3 141 63.1
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 8.3e-44 180.6 146 63.0
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 2.7e-42 175.6 146 62.3
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 2.7e-42 175.6 96 81.2
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.5e-42 175.3 142 62.7
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 7.7e-42 174.1 145 60.7
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 1.0e-41 173.7 138 63.8
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.3e-41 172.6 143 60.1
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 2.9e-41 172.2 143 60.8
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 6.1e-39 164.5 120 70.0
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.8e-38 162.9 86 82.6
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 6.8e-38 161.0 119 67.2
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 2.0e-37 159.5 119 69.7
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 3.7e-36 155.2 90 76.7
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.9e-36 154.8 84 78.6
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 2.9e-33 145.6 117 59.0
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 2.9e-33 145.6 110 64.5
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 4.4e-29 131.7 119 58.0
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 1.7e-28 129.8 112 57.1
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 3.7e-28 128.6 89 68.5
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 4.1e-27 125.2 113 58.4
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 3.5e-26 122.1 143 49.7
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 1.0e-25 120.6 113 55.8
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 6.6e-25 117.9 122 56.6
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 1.5e-24 116.7 90 66.7
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 5.8e-21 104.8 92 54.3
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 7.0e-19 97.8 89 58.4
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 1.7e-17 93.2 148 39.2
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 1.9e-16 89.7 158 39.2
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 1.5e-13 80.1 81 56.8
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 3.5e-10 68.9 73 57.5
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 6.0e-10 68.2 73 56.2
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 8.6e-09 64.3 69 50.7


User provided reference genes

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