Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.6e-135 486.1 244 100.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 2.1e-100 369.4 243 74.5
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.4e-99 366.7 244 73.4
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 73.8
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 2.0e-98 362.8 244 73.8
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.9e-96 356.3 244 72.1
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 2.4e-96 355.9 244 72.1
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 4.2e-96 355.1 244 68.9
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 7.1e-96 354.4 244 70.5
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 7.1e-96 354.4 244 69.7
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.2e-95 353.6 244 70.1
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.2e-95 353.6 244 70.5
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.1e-95 352.8 244 70.9
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.7e-95 352.4 245 69.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.7e-95 352.4 244 70.5
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 6.0e-95 351.3 244 70.1
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 7.9e-95 350.9 245 68.6
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.0e-94 350.5 237 72.6
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.3e-94 350.1 224 73.2
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.8e-94 349.7 228 72.8
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 3.0e-94 349.0 240 70.8
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 5.1e-94 348.2 240 71.7
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 5.1e-94 348.2 240 68.8
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 5.1e-94 348.2 244 68.9
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.1e-93 347.1 240 71.2
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.5e-93 345.9 244 68.4
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.3e-93 345.5 244 70.9
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 3.3e-93 345.5 224 72.8
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 5.6e-93 344.7 244 69.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 9.6e-93 344.0 227 73.6
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.3e-92 343.6 240 69.2
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 2.1e-92 342.8 224 71.9
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 6.2e-92 341.3 241 68.5
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 8.2e-92 340.9 224 73.7
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.4e-91 340.1 243 68.3
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 6.9e-91 337.8 240 68.3
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 6.9e-91 337.8 240 68.8
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.2e-90 337.0 244 69.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.2e-90 337.0 240 67.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.2e-90 337.0 240 68.3
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.5e-90 336.7 222 73.4
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.5e-90 336.7 240 69.6
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.5e-90 336.7 240 68.3
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.6e-90 335.9 243 68.3
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 3.4e-90 335.5 244 68.9
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 1.0e-89 334.0 244 66.0
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.3e-89 333.6 234 70.5
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.3e-89 333.6 240 67.9
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 2.2e-89 332.8 228 70.6
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.9e-88 329.7 234 68.8
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 2.5e-88 329.3 237 69.6
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 3.2e-88 328.9 228 69.7
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 7.1e-88 327.8 228 69.3
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 7.1e-88 327.8 240 66.7
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.2e-87 327.0 244 66.4
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 2.1e-87 326.2 244 66.4
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.1e-87 326.2 258 65.9
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 7.9e-87 324.3 244 65.2
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.0e-86 323.9 241 65.6
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.0e-86 323.9 241 65.6
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.0e-86 323.9 244 64.3
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.0e-86 323.9 245 63.7
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.3e-86 323.6 250 66.8
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.3e-86 323.6 239 67.4
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.8e-86 323.2 248 63.3
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 2.3e-86 322.8 268 62.7
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.3e-86 322.8 242 64.9
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 6.7e-86 321.2 224 69.2
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 6.7e-86 321.2 224 69.2
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 6.7e-86 321.2 224 69.2
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 6.7e-86 321.2 224 69.2
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.1e-85 320.5 244 65.6
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 1.5e-85 320.1 224 68.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.5e-85 320.1 228 70.2
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.3e-85 318.9 244 65.2
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.3e-85 318.5 228 69.7
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-85 317.8 224 68.3
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.6e-84 316.6 236 66.5
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 3.7e-84 315.5 227 66.5
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 4.8e-84 315.1 236 66.5
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 6.3e-84 314.7 245 64.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 6.3e-84 314.7 281 60.9
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 1.8e-83 313.2 245 64.5
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 6.9e-83 311.2 229 66.4
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 5.9e-82 308.1 224 67.4
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.7e-81 306.6 236 62.7
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.2e-79 300.4 227 64.8
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 6.1e-79 298.1 212 69.3
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.9e-77 293.1 222 63.5
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 3.4e-74 282.3 195 71.3
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 3.4e-74 282.3 197 70.1
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 5.9e-74 281.6 241 61.8
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-71 273.9 212 65.6
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 2.3e-70 269.6 233 55.4
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 4.8e-68 261.9 190 69.5
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 6.1e-63 245.0 231 52.8
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 1.1e-61 240.7 224 51.8
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 9.7e-61 237.7 176 67.6
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 5.3e-59 231.9 151 72.2
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 4.7e-55 218.8 231 52.8
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 8.8e-54 214.5 231 50.2
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.2e-53 214.2 226 50.9
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 5.5e-48 195.3 138 70.3
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 4.7e-47 192.2 153 60.8
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 1.0e-46 191.0 242 44.6
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.0e-45 186.8 240 45.8
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 4.4e-45 185.7 261 41.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-44 183.7 128 71.9
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.7e-41 173.7 199 49.2
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 9.5e-40 167.9 226 40.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.1e-35 154.5 206 44.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 4.7e-31 139.0 262 37.4
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.0e-29 133.7 176 43.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 4.9e-28 129.0 106 65.1
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 1.0e-25 121.3 80 73.8
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-19 100.9 73 63.0
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 7.8e-18 95.1 64 67.2
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-16 90.1 66 68.2
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 8.1e-15 85.1 127 41.7
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 2.9e-12 76.6 47 74.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.0e-10 68.9 232 25.0
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-09 67.4 50 68.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 8.6e-09 65.1 47 59.6
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 3.3e-08 63.2 39 74.4


User provided reference genes

Program Settings