Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.7e-275 952.2 533 100.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 1.8e-197 693.0 462 85.3
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.1e-197 691.8 462 86.1
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 2.5e-194 682.6 462 84.6
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 3.3e-194 682.2 462 83.8
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 7.3e-194 681.0 462 84.2
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 7.3e-194 681.0 461 85.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 8.0e-193 677.6 462 84.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.0e-192 677.2 462 83.8
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 1.2e-191 673.7 462 84.4
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 1.2e-191 673.7 462 83.3
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 5.8e-191 671.4 459 81.3
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.2e-190 669.5 462 81.4
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 3.7e-190 668.7 459 81.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 1.4e-189 666.8 462 83.5
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 5.4e-189 664.8 462 83.8
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 5.4e-189 664.8 461 81.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 7.0e-189 664.5 464 81.7
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.2e-188 663.7 463 81.9
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.8e-188 661.0 462 81.6
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.7e-187 659.8 464 75.4
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 3.9e-187 658.7 462 81.0
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.5e-186 656.8 459 79.1
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.5e-186 656.0 459 81.5
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.6e-185 653.3 459 81.7
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 2.8e-185 652.5 459 81.5
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 2.8e-185 652.5 458 80.1
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 4.7e-185 651.7 459 81.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 6.2e-185 651.4 460 79.3
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 8.0e-185 651.0 459 79.3
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 8.0e-185 651.0 462 80.3
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.1e-184 650.6 460 82.0
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.4e-184 650.2 441 85.7
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 1.8e-184 649.8 463 80.8
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 3.1e-184 649.0 459 80.2
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 3.1e-184 649.0 460 81.5
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 4.0e-184 648.7 460 80.9
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 6.8e-184 647.9 460 81.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.3e-182 643.7 459 81.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 2.2e-182 642.9 462 80.1
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 1.1e-181 640.6 462 78.6
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 1.4e-181 640.2 463 78.2
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.4e-181 640.2 465 80.4
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-181 640.2 462 79.4
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 5.4e-181 638.3 462 78.6
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 5.4e-181 638.3 504 69.6
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 9.2e-181 637.5 462 78.6
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 9.2e-181 637.5 462 78.4
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.7e-180 636.0 462 78.1
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.7e-180 636.0 462 79.7
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 6.0e-180 634.8 460 79.3
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 6.0e-180 634.8 454 79.7
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-179 632.9 459 73.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.3e-179 632.9 459 73.0
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 3.9e-179 632.1 462 78.8
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 6.6e-179 631.3 462 78.4
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.1e-178 630.6 460 77.8
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 1.5e-178 630.2 462 78.6
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.5e-178 629.4 461 77.4
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 5.6e-178 628.2 462 78.6
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 7.3e-178 627.9 462 78.4
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 6.2e-177 624.8 466 77.0
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.4e-176 623.6 462 77.9
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 4.0e-176 622.1 462 77.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 3.4e-175 619.0 462 74.2
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 5.8e-175 618.2 459 77.3
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 9.9e-175 617.5 459 75.8
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 8.3e-174 614.4 493 73.6
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.1e-173 614.0 476 74.6
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 2.4e-173 612.8 462 76.0
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 2.4e-173 612.8 483 72.7
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.2e-172 610.5 462 76.2
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 4.3e-170 602.1 459 74.9
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 1.2e-169 600.5 460 76.1
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 2.1e-169 599.7 460 76.1
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 6.2e-169 598.2 461 74.8
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 3.1e-168 595.9 464 75.9
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 5.2e-168 595.1 464 75.4
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 1.2e-167 594.0 456 75.4
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.2e-167 594.0 462 74.7
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.5e-167 593.6 462 74.7
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 4.4e-167 592.0 466 74.0
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.4e-167 592.0 551 66.6
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.9e-166 589.3 456 75.0
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 4.9e-166 588.6 459 74.7
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.4e-166 588.2 462 74.9
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 8.4e-166 587.8 456 74.3
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 7.8e-164 581.3 462 75.1
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.3e-163 579.7 462 73.4
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 8.7e-163 577.8 462 73.4
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 1.1e-162 577.4 463 72.1
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 1.9e-162 576.6 461 72.9
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 5.6e-162 575.1 387 74.7
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.3e-161 573.9 389 75.6
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 8.1e-161 571.2 387 74.9
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 9.0e-160 567.8 462 71.6
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 1.2e-159 567.4 462 67.3
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 7.6e-159 564.7 465 65.6
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 4.2e-157 558.9 389 74.0
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 3.0e-155 552.7 460 70.4
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 3.6e-153 545.8 388 72.2
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 4.8e-153 545.4 463 63.5
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 6.4e-150 535.0 410 77.8
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.1e-149 534.3 462 69.3
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 3.2e-149 532.7 459 68.6
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.5e-146 523.1 459 67.3
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.1e-145 520.0 462 70.8
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.0e-142 511.1 466 66.1
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.9e-141 506.9 496 64.1
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 2.3e-139 500.0 473 64.1
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 2.8e-137 493.0 384 76.3
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.4e-136 490.7 462 60.2
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 3.4e-119 433.0 462 57.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 6.1e-116 422.2 364 62.6
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.3e-115 420.2 477 53.7
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.1e-106 391.3 300 67.0
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 2.5e-101 373.6 462 50.4
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 5.9e-95 352.4 318 63.8
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 7.5e-82 308.9 291 69.4
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.1e-67 261.9 419 39.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 2.1e-63 247.7 391 37.9
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-59 235.3 189 70.4
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.8e-59 232.6 241 53.1
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 7.6e-50 202.6 513 38.6
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.4e-48 197.6 163 66.9
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.3e-45 186.8 134 69.4
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.6e-44 184.9 397 31.7
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.2e-44 183.0 122 76.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 5.3e-43 179.9 123 73.2
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.4e-40 171.8 505 35.4
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 9.6e-37 159.1 121 72.7
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.4e-34 150.6 156 57.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.3e-30 137.9 220 42.3
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.2e-24 117.5 93 64.5
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.8e-22 111.7 68 85.3
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 7.4e-21 106.3 101 89.1
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 3.4e-18 97.4 55 92.7
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 3.8e-17 94.0 113 47.8
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 2.8e-12 77.8 60 65.0
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.1e-11 75.9 65 63.1
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.8e-11 75.1 49 87.8
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 2.0e-10 71.6 61 60.7
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 4.5e-10 70.5 62 59.7
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 4.5e-10 70.5 67 53.7
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 4.5e-10 70.5 97 48.5
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.0e-09 69.3 110 41.8
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 2.2e-09 68.2 405 21.5
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 7.2e-08 63.2 50 66.0
Nitab4.5_0010351g0020 Nicotiana tabacum HOM05D004145 ORTHO05D004879 1.2e-07 62.4 406 20.7
Solyc01g098180.3 Solanum lycopersicum HOM05D004145 ORTHO05D004879 1.2e-07 62.4 405 19.8
Sopen01g041760 Solanum pennellii HOM05D004145 ORTHO05D004879 1.2e-07 62.4 405 19.8
RcHm_v2.0_Chr6g0273391 Rosa chinensis HOM05D004145 ORTHO05D004879 1.6e-07 62.0 426 20.4
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 2.7e-07 61.2 404 20.3
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 2.7e-07 61.2 390 22.8
Cre12.g502200 Chlamydomonas reinhardtii HOM05D004145 ORTHO05D004879 3.6e-07 60.8 416 21.9
MELO3C033360.2 Cucumis melo HOM05D005230 ORTHO05D013374 4.6e-07 60.5 63 54.0
SHI18260 Sapria himalayana HOM05D004145 ORTHO05D004879 4.6e-07 60.5 406 19.7
PGR004G0092 Punica granatum HOM05D004145 ORTHO05D004879 6.1e-07 60.1 425 22.4
FvH4_2g12670 Fragaria vesca HOM05D004145 ORTHO05D004879 1.8e-06 58.5 419 20.0
Lsat_1_v5_gn_6_96941 Lactuca sativa HOM05D004145 ORTHO05D004879 3.0e-06 57.8 263 24.0
RcHm_v2.0_Chr2g0129391 Rosa chinensis HOM05D004145 ORTHO05D004879 5.1e-06 57.0 419 20.8
TWI12G1275 Tripterygium wilfordii HOM05D004145 ORTHO05D004879 6.7e-06 56.6 273 23.1


User provided reference genes

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