Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.5e-118 429.5 206 100.0
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.6e-101 371.7 184 97.3
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 7.1e-89 330.9 232 74.1
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 5.7e-78 294.7 198 67.7
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.1e-77 292.7 194 70.1
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.1e-77 292.7 197 69.0
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 2.8e-77 292.4 198 67.7
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.8e-77 292.4 208 65.4
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 8.2e-77 290.8 194 70.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 8.2e-77 290.8 194 69.1
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.4e-76 290.0 198 67.7
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.4e-76 290.0 197 69.0
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.4e-76 290.0 197 69.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.8e-76 289.7 194 69.1
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 2.4e-76 289.3 198 67.2
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 5.3e-76 288.1 198 66.2
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 6.9e-76 287.7 194 68.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.2e-75 287.0 194 68.6
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 3.4e-75 285.4 193 69.4
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.4e-75 285.4 197 68.0
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.3e-74 283.5 197 66.5
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.3e-74 283.5 206 64.1
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.2e-74 282.7 195 67.2
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 3.8e-74 282.0 202 64.4
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.8e-74 282.0 198 65.7
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 6.5e-74 281.2 198 66.7
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 6.5e-74 281.2 206 63.6
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 8.5e-74 280.8 197 66.0
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.1e-73 280.4 197 66.0
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 5.5e-73 278.1 206 63.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 9.3e-73 277.3 198 64.6
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.6e-72 275.0 206 61.7
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.0e-71 273.9 199 65.8
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.3e-71 273.5 198 63.6
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.3e-71 273.5 206 60.7
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.8e-71 273.1 199 62.8
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.8e-71 273.1 205 63.4
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 3.0e-71 272.3 206 62.1
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 8.7e-71 270.8 193 65.3
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-70 270.0 196 63.8
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.9e-70 269.6 199 63.8
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.9e-70 269.6 198 63.6
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.9e-70 269.6 195 64.1
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 2.5e-70 269.2 198 62.6
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 2.5e-70 269.2 198 64.6
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.3e-70 268.9 205 61.0
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 7.4e-70 267.7 200 64.0
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.3e-69 266.9 195 63.1
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-69 266.5 198 62.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 3.7e-69 265.4 195 63.1
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 4.8e-69 265.0 195 64.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.8e-69 265.0 195 62.6
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.8e-69 265.0 195 63.1
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.1e-68 263.8 195 64.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.8e-68 263.1 203 60.6
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.8e-68 263.1 195 62.6
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.4e-68 262.7 194 63.4
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.1e-68 262.3 198 61.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 4.1e-68 261.9 195 63.6
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 4.1e-68 261.9 198 62.1
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 6.9e-68 261.2 199 62.8
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.2e-67 260.4 198 60.6
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.0e-67 259.6 194 63.4
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.0e-67 259.6 196 64.8
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.4e-67 258.8 213 56.3
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 7.7e-67 257.7 198 63.1
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.0e-66 257.3 196 63.8
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.7e-66 256.5 204 60.3
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.7e-66 256.5 198 62.6
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.2e-66 256.1 198 62.6
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.2e-66 256.1 198 62.6
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 3.8e-66 255.4 206 60.2
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.8e-66 255.4 198 62.1
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 3.8e-66 255.4 196 62.8
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.8e-66 255.4 202 61.4
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.8e-66 255.4 215 57.7
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 6.5e-66 254.6 198 59.6
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 8.5e-66 254.2 198 59.1
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.1e-65 253.8 198 60.1
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.1e-65 253.8 198 60.6
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 4.2e-65 251.9 202 59.4
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 7.2e-65 251.1 202 58.9
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 9.4e-65 250.8 202 58.4
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 1.6e-64 250.0 202 59.4
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.6e-64 250.0 198 59.1
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.1e-64 248.1 194 59.3
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 7.9e-64 247.7 202 60.4
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.0e-63 247.3 196 60.7
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.5e-62 243.4 198 58.6
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.3e-62 242.3 198 59.6
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.4e-62 241.9 196 56.6
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.8e-61 239.2 221 53.4
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 4.8e-61 238.4 206 54.4
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.4e-60 236.9 198 57.6
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 5.3e-60 235.0 194 57.7
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 5.3e-60 235.0 206 53.9
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.5e-59 233.4 206 55.3
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.2e-56 223.8 174 59.2
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 4.7e-56 221.9 206 50.5
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 7.9e-56 221.1 208 52.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 8.8e-55 217.6 198 48.5
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.0e-54 216.5 188 56.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 7.4e-54 214.5 126 82.5
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.2e-53 213.0 195 50.8
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.2e-53 211.1 175 58.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.2e-51 207.2 196 50.5
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 2.2e-50 203.0 159 61.0
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 2.2e-50 203.0 194 52.6
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.1e-49 200.7 195 48.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 8.0e-48 194.5 189 51.3
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 4.0e-47 192.2 185 51.9
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.6e-46 189.5 214 43.0
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.6e-43 180.3 127 66.1
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.0e-42 177.6 198 46.5
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.7e-42 176.8 198 46.5
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.0e-42 175.3 154 57.1
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 9.4e-41 171.0 199 47.2
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.7e-40 169.5 199 45.2
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.8e-39 164.9 134 57.5
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.2e-38 164.1 183 44.3
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 3.4e-38 162.5 215 39.1
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.7e-38 161.8 171 45.6
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.2e-37 159.8 126 57.9
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.0e-35 153.3 190 45.3
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.2e-32 144.1 112 60.7
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 9.8e-30 134.4 93 65.6
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.8e-29 132.9 169 41.4
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 3.7e-29 132.5 92 64.1
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.6e-26 121.3 198 36.9
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-24 117.5 76 71.1
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.6e-24 117.1 99 59.6
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.6e-22 109.8 122 46.7
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 9.8e-22 107.8 63 69.8
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 6.4e-21 105.1 210 34.8
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 7.0e-20 101.7 212 31.6
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 6.0e-19 98.6 204 32.4
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 4.4e-14 82.4 74 52.7
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 6.4e-13 78.6 181 29.3
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.3e-10 70.9 47 66.0
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.7e-10 70.5 192 27.6
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.3e-10 70.1 93 37.6
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.5e-09 66.6 190 24.7
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.2e-08 64.3 40 67.5
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 6.2e-08 62.0 83 41.0
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 6.2e-08 62.0 83 41.0
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-07 60.8 37 67.6
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.8e-07 60.5 83 39.8
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 8.9e-07 58.2 39 61.5
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 1.5e-06 57.4 174 26.4
SGA_v2.0_scaffold226G43143 Striga asiatica HOM05D000344 ORTHO05D000934 1.5e-06 57.4 49 57.1
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 4.4e-06 55.8 83 36.1


User provided reference genes

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