Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.1e-139 500.0 245 100.0
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 8.2e-84 314.3 249 68.3
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 6.9e-83 311.2 248 67.7
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 5.9e-82 308.1 248 66.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.0e-81 307.4 221 73.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.0e-81 307.4 248 68.1
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 6.5e-81 304.7 251 66.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 6.5e-81 304.7 229 71.2
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 4.2e-80 302.0 250 67.2
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.0e-78 297.4 247 65.6
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 1.0e-78 297.4 228 69.3
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.9e-78 295.4 247 64.4
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 6.7e-78 294.7 249 63.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.1e-77 293.9 249 64.3
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.5e-77 293.5 247 64.4
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.0e-77 293.1 251 63.3
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 3.3e-77 292.4 215 70.2
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.4e-77 292.0 252 62.7
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 7.4e-77 291.2 252 63.5
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.7e-76 290.0 252 64.7
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.7e-76 290.0 252 64.3
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.2e-76 289.7 264 60.2
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.1e-75 287.3 251 63.3
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 1.8e-75 286.6 250 61.2
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 9.1e-75 284.3 253 61.3
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.2e-74 283.9 253 62.1
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.6e-74 283.5 253 61.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 4.5e-74 282.0 253 63.2
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.9e-74 281.6 234 67.5
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.0e-73 280.8 262 60.7
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.0e-73 280.8 236 66.5
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 1.3e-73 280.4 254 64.6
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.3e-73 280.4 234 67.1
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 5.0e-73 278.5 201 74.1
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 5.0e-73 278.5 234 66.7
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.0e-73 278.5 228 64.9
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 6.5e-73 278.1 224 66.5
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 6.5e-73 278.1 210 69.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 6.5e-73 278.1 212 68.4
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-72 276.9 244 60.2
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.5e-72 276.2 244 59.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 2.5e-72 276.2 244 59.8
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.2e-72 275.8 211 70.6
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 5.5e-72 275.0 213 67.1
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 3.6e-71 272.3 221 67.0
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.6e-71 272.3 257 56.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 4.7e-71 271.9 212 69.3
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 6.1e-71 271.6 242 64.5
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.8e-70 270.0 218 64.2
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.8e-70 270.0 255 58.0
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 2.3e-70 269.6 251 60.2
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.0e-70 269.2 213 69.0
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 4.0e-70 268.9 228 64.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.2e-70 268.5 221 65.2
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 5.2e-70 268.5 251 61.4
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 6.7e-70 268.1 259 56.4
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.8e-70 267.7 246 59.3
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.2e-69 267.3 259 57.1
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.5e-69 266.9 216 66.2
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.0e-69 266.5 206 68.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 3.3e-69 265.8 234 61.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.4e-69 265.4 208 66.8
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 9.7e-69 264.2 252 61.1
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.3e-68 263.8 241 59.3
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 4.8e-68 261.9 268 56.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.4e-67 259.6 250 56.4
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 4.1e-67 258.8 217 67.3
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 5.3e-67 258.5 225 61.3
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 7.0e-67 258.1 243 59.3
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 7.0e-67 258.1 243 59.3
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 9.1e-67 257.7 245 56.7
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 251 56.2
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.2e-66 257.3 251 55.8
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.2e-66 257.3 245 56.7
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.0e-66 256.5 221 65.2
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 3.5e-66 255.8 211 64.9
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.5e-66 255.4 258 54.3
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 4.5e-66 255.4 207 67.1
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 5.9e-66 255.0 248 55.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 7.7e-66 254.6 257 54.9
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 7.7e-66 254.6 257 54.9
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 7.7e-66 254.6 257 54.9
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.0e-65 254.2 257 54.9
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.0e-65 254.2 231 60.2
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-65 253.4 257 54.9
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.2e-65 253.1 207 64.7
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.2e-65 253.1 222 63.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.8e-65 252.3 245 55.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 6.5e-65 251.5 233 63.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.9e-64 250.0 213 65.7
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 2.5e-64 249.6 256 57.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 9.4e-64 247.7 257 54.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.7e-63 245.4 203 65.5
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 6.1e-63 245.0 212 62.7
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.0e-63 244.6 249 55.8
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 8.0e-63 244.6 260 55.4
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 8.8e-62 241.1 184 71.7
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 3.4e-61 239.2 284 51.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 5.7e-61 238.4 219 61.6
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-60 237.3 220 61.4
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-60 236.9 170 68.2
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.7e-60 236.9 218 63.3
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 2.2e-60 236.5 182 69.2
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 6.3e-60 235.0 180 71.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 7.0e-59 231.5 247 54.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.7e-57 226.9 250 51.2
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.3e-57 226.5 206 61.2
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.3e-57 226.5 247 51.0
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.3e-57 226.5 225 58.2
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.0e-57 225.3 204 60.3
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.1e-56 224.2 207 59.9
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.5e-56 223.8 245 52.7
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 9.5e-56 221.1 243 51.9
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 9.5e-56 221.1 238 52.9
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 3.6e-55 219.2 243 52.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 8.0e-55 218.0 213 58.7
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-54 216.5 239 51.5
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 5.2e-54 215.3 181 68.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 6.8e-54 214.9 197 60.9
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.5e-53 213.8 252 51.6
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.0e-53 213.4 208 60.1
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 4.4e-53 212.2 193 60.6
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.5e-53 211.5 184 58.2
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.8e-53 211.1 204 57.8
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.5e-48 196.4 182 58.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.2e-47 194.1 212 54.7
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 2.8e-47 193.0 157 63.1
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 3.0e-46 189.5 254 46.1
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.8e-46 188.3 174 52.9
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.5e-45 187.2 187 54.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.6e-45 186.4 198 53.0
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 6.4e-44 181.8 187 52.9
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.1e-43 179.1 151 60.9
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.5e-42 176.0 180 55.0
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 4.3e-40 169.1 145 72.4
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.5e-40 167.9 143 68.5
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 4.7e-39 165.6 195 51.3
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-38 164.5 115 66.1
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 7.0e-35 151.8 150 63.3
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 9.2e-35 151.4 139 64.0
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 1.7e-33 147.1 163 58.3
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.7e-33 147.1 170 48.2
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.3e-32 142.9 137 56.2
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 9.5e-32 141.4 146 52.1
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 2.3e-30 136.7 146 61.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 8.9e-30 134.8 156 56.4
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 2.6e-29 133.3 244 37.7
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.8e-29 132.1 144 60.4
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.4e-27 126.7 135 61.5
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.2e-27 126.3 102 59.8
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 6.0e-26 122.1 63 77.8
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 5.1e-25 119.0 152 52.6
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 4.7e-23 112.5 224 39.3
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 1.2e-21 107.8 188 37.2
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 9.9e-21 104.8 98 65.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.7e-20 104.0 66 68.2
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.2e-19 99.8 115 44.3
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 3.9e-17 92.8 137 48.9
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 8.7e-17 91.7 118 40.7
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.3e-16 89.4 101 52.5
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 5.6e-16 89.0 115 49.6
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 2.6e-13 80.1 90 57.8
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 1.2e-10 71.2 48 64.6
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 1.2e-10 71.2 121 38.8
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.1e-10 70.5 69 52.2
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-09 68.2 68 64.7
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 1.0e-09 68.2 68 64.7
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 2.3e-09 67.0 88 40.9
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 5.6e-08 62.4 66 45.5
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.6e-08 61.6 67 47.8
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 2.8e-07 60.1 92 42.4
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.6e-07 59.7 54 51.9
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-06 58.2 92 41.3
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.4e-06 57.0 50 50.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 9.0e-06 55.1 51 47.1
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 9.0e-06 55.1 51 43.1


User provided reference genes

Program Settings