Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 2.4e-234 815.1 402 100.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 1.3e-224 782.7 402 94.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.4e-221 772.7 402 92.5
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 4.4e-220 767.7 402 92.8
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.8
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.9e-218 762.3 402 91.0
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.4e-218 761.9 402 91.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 91.0
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 91.0
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 92.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 92.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.5
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.0
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 91.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.0e-216 756.5 402 91.3
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 91.0
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.3
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 6.6e-216 753.8 401 90.0
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 8.7e-216 753.4 402 90.5
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.1e-215 753.1 402 90.5
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 1.9e-215 752.3 402 90.5
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.0
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.5
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 90.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.8
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 89.6
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 90.0
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.5
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 90.0
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 89.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 88.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.6
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.3
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 88.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.8
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.3
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 89.3
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 89.1
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 89.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.3
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 89.1
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 89.1
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.6
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.6
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 89.6
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 89.3
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.6
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 87.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.2e-211 738.8 411 87.1
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 88.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 8.4e-211 736.9 416 86.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 88.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 87.6
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.3
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 4.2e-210 734.6 416 86.1
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.6
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.1e-210 733.8 402 87.6
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 9.3e-210 733.4 417 85.4
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 87.3
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 86.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 5.1e-208 727.6 402 86.8
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.8
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 6.2e-206 720.7 429 82.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.1e-205 719.9 438 81.1
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 86.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.8e-205 719.2 396 86.1
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 2.4e-205 718.8 401 86.3
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 86.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 86.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 86.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 86.3
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 86.3
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 9.0e-205 716.8 441 81.0
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 85.8
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 3.4e-204 714.9 402 85.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 5.8e-204 714.1 402 84.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 85.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 84.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.0e-203 713.4 402 86.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.0e-203 713.4 419 84.7
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.7e-203 712.6 402 85.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.2e-203 712.2 402 84.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.9e-203 711.8 402 85.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.9e-203 711.8 402 85.1
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 84.8
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 84.8
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 8.4e-203 710.3 402 84.8
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.1e-202 709.9 402 85.6
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 5.5e-202 707.6 402 84.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 9.3e-202 706.8 402 86.3
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 3.5e-201 704.9 402 84.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.9e-201 703.7 400 83.2
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.3e-200 703.0 402 84.3
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 5.7e-199 697.6 402 81.6
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 8.2e-198 693.7 402 84.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 7.6e-196 687.2 375 88.3
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.3e-192 675.6 357 90.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 80.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.1e-189 666.8 360 88.6
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 6.9e-189 664.1 402 78.4
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 3.4e-188 661.8 361 89.8
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 3.4e-188 661.8 402 79.4
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.2e-179 632.5 402 77.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.5e-178 627.9 401 74.3
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 8.8e-176 620.5 340 88.5
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 5.7e-175 617.8 402 72.4
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.7e-174 616.3 334 88.9
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.0e-172 609.4 402 71.6
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.5e-170 602.4 402 75.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.1e-169 599.4 403 71.0
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.1e-169 597.8 403 70.5
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.0e-168 595.5 402 70.6
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 5.5e-162 574.7 402 68.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.4e-160 570.1 401 66.8
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.4e-157 559.3 403 66.7
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 7.2e-154 547.7 289 90.7
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 6.8e-144 514.6 403 67.5
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 8.3e-142 507.7 419 64.2
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 5.8e-135 485.0 402 63.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 3.6e-129 465.7 259 86.1
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 8.6e-123 444.5 394 55.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.4e-117 426.4 395 54.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.3e-114 415.6 276 75.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.0e-104 382.5 229 81.7
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-101 374.4 219 83.6
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.9e-101 373.6 219 83.1
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 4.2e-101 372.5 219 82.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.3e-82 309.3 300 53.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.3e-80 302.4 160 90.6
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.9e-78 296.6 167 84.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 6.5e-54 215.7 116 88.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.8e-33 147.1 86 81.4
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.5e-31 139.8 352 27.8
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.8e-30 136.7 351 28.5
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.9e-17 93.2 47 91.5
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.1e-13 82.0 45 77.8
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 2.5e-13 80.9 72 59.7
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.4e-11 75.1 316 23.4


User provided reference genes

Program Settings