Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1958.0 942 100.0
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1267.7 942 63.4
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1254.6 927 63.3
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1254.6 923 64.0
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1243.0 926 63.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1234.2 922 63.0
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1233.0 927 62.1
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1224.9 931 62.3
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1218.8 929 62.8
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 0.0e+00 1216.1 939 61.8
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1214.1 927 61.2
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1202.6 930 61.2
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1200.3 925 61.7
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1200.3 940 60.9
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1199.5 925 61.1
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1196.4 921 61.3
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1196.0 925 61.4
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1194.5 925 61.4
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1184.5 944 59.3
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1178.3 947 60.0
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1175.2 914 60.1
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1172.9 921 59.1
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1172.5 921 59.6
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1164.1 845 64.5
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1161.4 875 62.5
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1158.3 964 57.9
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1149.4 917 59.5
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1143.6 947 58.2
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1136.3 909 60.4
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1127.5 918 58.9
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 0.0e+00 1120.9 953 58.3
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1120.9 926 58.5
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1111.3 928 57.3
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1110.5 864 61.3
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1109.0 947 57.1
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 0.0e+00 1106.7 817 63.2
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1105.1 925 57.2
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 0.0e+00 1102.4 949 56.9
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 0.0e+00 1100.9 943 56.2
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1100.5 922 57.4
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1098.2 943 56.4
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1096.3 922 56.7
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1090.9 848 59.2
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 0.0e+00 1090.1 948 57.1
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 0.0e+00 1085.5 931 56.5
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 6.4e-312 1074.7 941 55.4
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 1.3e-310 1069.7 890 58.4
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 7.0e-309 1063.9 905 56.7
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 9.2e-309 1063.5 945 55.2
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 2.7e-308 1062.0 929 56.1
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 1.1e-306 1056.6 921 55.8
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 1.6e-305 1052.7 927 56.3
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 1.4e-304 1049.7 948 54.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 4.0e-304 1048.1 888 57.2
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.1e-300 1035.8 790 61.1
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 3.0e-299 1031.9 951 55.4
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 4.3e-298 1028.1 941 54.1
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 1.2e-297 1026.5 933 54.4
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 1.6e-297 1026.2 946 53.7
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 5.2e-296 1021.1 908 53.9
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.9e-293 1012.7 837 58.2
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 1.9e-293 1012.7 933 54.2
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 9.2e-293 1010.4 712 65.9
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 1.2e-292 1010.0 920 53.5
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 3.9e-291 1005.0 918 53.3
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 6.2e-289 997.7 923 52.2
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.4e-288 995.7 906 54.0
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 5.2e-288 994.6 909 54.6
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 6.8e-288 994.2 909 52.6
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.4e-285 985.7 905 53.4
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 1.3e-283 979.9 943 51.4
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 3.0e-283 978.8 907 51.6
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 8.7e-283 977.2 736 62.0
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 4.4e-279 964.9 819 55.8
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 4.4e-279 964.9 819 55.8
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.5e-274 949.1 947 49.7
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 2.5e-274 949.1 918 52.6
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.1e-272 942.2 755 58.7
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 2.4e-269 932.6 869 51.8
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 5.5e-269 931.4 826 55.7
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 2.0e-263 912.9 723 60.3
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 6.7e-259 897.9 901 50.3
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 3.3e-258 895.6 941 47.5
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 1.1e-256 890.6 912 50.1
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 7.2e-245 851.3 816 52.2
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 4.6e-244 848.6 635 63.0
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 3.9e-243 845.5 910 47.0
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 9.1e-232 807.7 626 60.9
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 6.3e-225 785.0 940 46.0
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 4.1e-208 729.2 644 54.5
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.3e-193 681.0 987 38.0
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.5e-189 666.8 577 53.9
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 3.3e-189 666.4 476 63.7
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 3.3e-165 586.6 563 53.1
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.8e-164 582.8 438 61.4
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.9e-152 544.3 499 54.5
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.4e-152 543.9 475 56.0
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.1e-147 528.5 508 51.2
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 1.6e-119 434.9 872 30.8
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.7e-119 433.3 382 56.5
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 7.9e-119 432.6 383 56.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.6e-103 380.6 308 57.1
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.5e-80 305.4 269 56.1
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.6e-71 275.4 233 58.8
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.9e-67 261.9 210 57.1
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 3.3e-64 251.1 265 49.4
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 5.8e-61 240.4 250 43.6
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 7.1e-59 233.4 279 39.4
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.4e-45 188.0 265 39.2
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 6.9e-30 137.1 105 62.9
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 6.9e-30 137.1 108 54.6
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 6.5e-28 130.6 134 50.0
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 8.4e-28 130.2 168 44.0
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 5.5e-27 127.5 168 44.0
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.8e-23 115.2 211 35.5
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 1.6e-18 99.4 111 48.6
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 7.9e-18 97.1 86 55.8
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.5e-16 92.0 96 46.9
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 9.1e-14 83.6 84 51.2
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 5.0e-12 77.8 89 44.9
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 9.4e-11 73.6 53 62.3
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 9.4e-11 73.6 50 64.0
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 5.7e-08 64.3 57 50.9


User provided reference genes

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