Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.4e-193 677.9 469 100.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 1.4e-129 467.2 291 74.9
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 3.2e-129 466.1 291 75.6
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.2e-129 466.1 292 75.3
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 1.6e-128 463.8 292 74.7
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 2.7e-128 463.0 293 73.7
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 3.6e-128 462.6 289 75.8
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 4.7e-128 462.2 288 75.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.4e-127 460.7 291 74.9
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.4e-127 460.7 291 74.9
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 1.8e-127 460.3 291 74.2
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 3.0e-127 459.5 293 75.1
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 8.8e-127 458.0 290 74.1
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 8.8e-127 458.0 300 72.3
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 3.3e-126 456.1 264 79.5
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 3.3e-126 456.1 291 74.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.7e-125 453.8 262 78.2
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 8.2e-125 451.4 286 76.2
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 1.1e-124 451.1 262 77.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 1.4e-124 450.7 260 78.5
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.4e-124 450.7 293 72.0
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.4e-124 450.7 291 72.2
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 1.8e-124 450.3 262 80.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.4e-124 449.9 291 72.9
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.4e-124 449.9 262 77.9
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.4e-124 449.9 253 78.7
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 3.1e-124 449.5 260 78.5
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 4.1e-124 449.1 291 78.0
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.3e-124 448.7 262 77.9
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.3e-124 448.7 291 73.9
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 5.3e-124 448.7 292 73.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 9.1e-124 448.0 291 77.7
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 9.1e-124 448.0 291 71.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 9.1e-124 448.0 293 72.7
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.6e-123 447.2 292 71.9
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 1.6e-123 447.2 258 79.1
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.0e-123 446.8 253 78.3
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 2.6e-123 446.4 253 79.1
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.6e-123 446.4 253 78.7
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 4.5e-123 445.7 260 79.6
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 5.9e-123 445.3 291 71.5
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.9e-123 445.3 291 74.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 7.7e-123 444.9 262 79.0
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.0e-122 444.5 253 78.3
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.0e-122 444.5 293 71.3
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.3e-122 444.1 259 78.8
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.3e-122 444.1 259 78.8
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.3e-122 444.1 259 78.4
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.7e-122 443.7 285 74.0
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.2e-122 443.4 291 71.1
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 5.0e-122 442.2 292 70.2
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 6.5e-122 441.8 291 71.5
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 6.5e-122 441.8 293 70.6
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 8.5e-122 441.4 259 78.0
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 3.2e-121 439.5 287 70.7
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.2e-121 439.1 292 69.9
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 4.2e-121 439.1 259 77.6
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.2e-121 438.3 260 78.5
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.2e-120 437.6 256 78.9
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.2e-120 437.6 259 76.8
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.1e-120 436.8 287 73.5
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 6.1e-120 435.3 291 69.8
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 6.1e-120 435.3 293 72.7
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 6.1e-120 435.3 259 76.1
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.0e-119 434.5 291 69.4
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 3.0e-119 433.0 291 69.8
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 3.0e-119 433.0 284 71.5
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 3.0e-119 433.0 293 69.6
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 6.8e-119 431.8 291 70.4
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 6.8e-119 431.8 286 70.6
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 8.8e-119 431.4 255 76.5
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 1.2e-118 431.0 263 75.3
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 1.5e-118 430.6 262 76.3
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 2.0e-118 430.3 286 70.6
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 2.0e-118 430.3 258 76.4
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 2.0e-118 430.3 284 73.2
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.6e-118 429.9 315 66.7
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 3.4e-118 429.5 291 70.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 9.7e-118 427.9 291 70.8
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 2.8e-117 426.4 253 74.3
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.8e-117 425.6 287 69.0
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 4.8e-117 425.6 290 67.9
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.1e-116 424.5 293 70.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 1.4e-116 424.1 292 68.8
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.4e-116 424.1 291 69.8
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 3.1e-116 422.9 240 82.1
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 3.1e-116 422.9 287 68.3
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 7.0e-116 421.8 293 68.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 7.0e-116 421.8 267 71.9
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 7.0e-116 421.8 277 70.4
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 5.9e-115 418.7 277 69.0
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.9e-115 418.7 259 77.2
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 7.7e-115 418.3 253 75.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-114 417.5 254 74.4
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 2.2e-114 416.8 261 73.9
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 2.9e-114 416.4 262 73.7
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 5.0e-114 415.6 256 75.0
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.0e-114 415.6 251 74.5
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 5.5e-113 412.1 262 71.4
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 7.2e-113 411.8 262 74.4
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.0e-111 406.0 255 73.7
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 6.8e-111 405.2 304 69.1
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.4e-110 402.5 240 77.5
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 2.8e-109 399.8 303 68.6
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.1e-108 397.9 244 76.6
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 1.6e-107 394.0 244 77.0
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.7e-106 390.6 257 70.8
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.7e-106 390.6 304 61.8
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 8.6e-106 388.3 351 56.4
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.8e-103 380.6 293 63.5
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 5.2e-103 379.0 291 61.9
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 6.3e-101 372.1 262 67.9
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.2e-99 367.9 274 63.9
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.6e-94 350.1 200 79.0
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 4.4e-94 349.4 201 78.1
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.9e-93 346.7 260 65.8
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 7.8e-91 338.6 300 55.3
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.1e-89 334.7 286 55.9
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 1.4e-87 327.8 303 52.1
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 5.8e-86 322.4 184 79.9
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.7e-82 310.8 231 63.6
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.5e-81 307.0 172 82.0
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.5e-81 307.0 172 82.0
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.1e-80 302.0 288 54.2
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 1.8e-79 300.8 172 80.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.5e-78 297.7 231 62.3
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 2.2e-77 293.9 189 74.6
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 2.9e-77 293.5 174 78.2
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.1e-76 289.7 174 78.2
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.7e-74 284.3 203 66.0
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-74 283.9 171 77.8
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 8.6e-74 282.0 273 58.2
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.5e-73 281.2 298 51.7
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.9e-69 266.9 204 65.7
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.7e-67 260.4 222 58.1
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 3.3e-65 253.4 244 51.6
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.3e-64 251.5 233 52.8
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.0e-63 246.5 191 61.8
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.1e-55 221.9 297 43.1
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.0e-55 219.9 158 70.9
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 5.8e-54 216.1 178 57.3
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.8e-53 213.4 210 57.1
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 2.7e-51 207.2 230 50.0
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 5.1e-50 203.0 147 66.0
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.5e-49 201.4 143 67.1
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 1.3e-48 198.4 228 46.1
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 2.0e-46 191.0 270 40.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 2.6e-46 190.7 173 55.5
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 2.8e-40 170.6 128 63.3
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 4.8e-40 169.9 124 62.9
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 7.4e-33 146.0 85 71.8
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.8e-24 116.7 79 63.3
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-10 72.0 50 58.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 1.4e-10 72.0 50 58.0
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 6.7e-10 69.7 41 68.3
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.6e-06 58.5 141 30.5
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 2.0e-06 58.2 88 34.1
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 7.7e-06 56.2 142 27.5
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.7e-06 56.2 165 27.3


User provided reference genes

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