Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 8.7e-35 150.2 104 100.0
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.6e-17 92.8 112 55.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.2e-17 92.4 108 55.6
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.2e-17 90.5 116 53.4
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 108 53.7
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.4e-16 89.0 110 52.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 2.4e-16 89.0 111 57.7
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.5e-15 86.3 109 49.5
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.5e-15 86.3 112 52.7
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.5e-15 86.3 113 52.2
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.4e-15 85.1 113 49.6
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.4e-15 85.1 113 49.6
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 5.9e-15 84.3 111 55.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 5.9e-15 84.3 109 51.4
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-14 83.6 113 50.4
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 6.5e-14 80.9 114 50.0
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.9e-13 79.3 111 46.8
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 4.2e-13 78.2 116 49.1
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 5.5e-13 77.8 110 45.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 5.5e-13 77.8 112 46.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 9.4e-13 77.0 113 46.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.1e-12 75.9 112 49.1
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 4.6e-12 74.7 112 56.2
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 7.9e-12 73.9 110 43.6
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.0e-11 73.6 113 47.8
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.0e-11 73.6 111 45.9
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.8e-11 72.8 114 48.2
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.8e-11 72.8 112 48.2
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 2.3e-11 72.4 108 53.7
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.3e-11 72.4 108 53.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 3.9e-11 71.6 113 45.1
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 3.9e-11 71.6 107 46.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 3.9e-11 71.6 111 45.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 3.9e-11 71.6 111 47.7
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 5.1e-11 71.2 112 47.3
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.7e-11 70.9 114 45.6
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 8.8e-11 70.5 111 45.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.1e-10 70.1 110 47.3
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-10 70.1 106 52.8
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 114 45.6
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.0e-10 69.3 105 44.8
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.0e-10 69.3 108 52.8
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.0e-10 69.3 112 49.1
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.5e-10 68.9 108 47.2
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 3.3e-10 68.6 115 45.2
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 4.3e-10 68.2 107 43.9
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.7e-10 67.8 115 41.7
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.7e-10 67.8 113 46.0
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 5.7e-10 67.8 113 49.6
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 5.7e-10 67.8 102 42.2
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 5.7e-10 67.8 112 44.6
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 7.4e-10 67.4 110 45.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 7.4e-10 67.4 109 44.0
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 9.7e-10 67.0 112 45.5
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.3e-09 66.6 109 46.8
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 42.2
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.7e-09 66.2 115 44.3
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 43.1
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.7e-09 66.2 110 47.3
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.2e-09 65.9 112 41.1
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 111 45.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.2e-09 65.9 118 43.2
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.2e-09 65.9 113 47.8
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.8e-09 65.5 108 45.4
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.8e-09 65.5 108 45.4
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.8e-09 65.5 108 45.4
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.8e-09 65.5 110 50.0
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 3.7e-09 65.1 109 42.2
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.7e-09 65.1 107 38.3
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 4.8e-09 64.7 108 41.7
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.3e-09 64.3 113 43.4
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 6.3e-09 64.3 110 43.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.3e-09 64.3 111 39.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 8.2e-09 63.9 111 45.0
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.2e-09 63.9 111 39.6
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 8.2e-09 63.9 111 39.6
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 8.2e-09 63.9 111 48.6
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 8.2e-09 63.9 111 48.6
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.1e-08 63.5 117 41.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.4e-08 63.2 110 41.8
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.8e-08 62.8 111 49.5
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.8e-08 62.8 111 49.5
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.4e-08 62.4 105 43.8
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.4e-08 62.4 107 41.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.4e-08 62.4 86 46.5
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 3.1e-08 62.0 112 42.0
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 4.1e-08 61.6 113 41.6
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 5.3e-08 61.2 114 41.2
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.3e-08 61.2 107 43.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 6.9e-08 60.8 109 42.2
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 6.9e-08 60.8 109 42.2
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 6.9e-08 60.8 109 42.2
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.9e-08 60.8 108 43.5
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.9e-08 60.8 108 43.5
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 9.1e-08 60.5 88 43.2
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 9.1e-08 60.5 108 41.7
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.2e-07 60.1 115 40.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.5e-07 59.7 110 40.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.5e-07 59.7 108 40.7
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.0e-07 59.3 107 40.2
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.0e-07 59.3 107 39.3
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.0e-07 59.3 28 89.3
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.6e-07 58.9 110 40.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.6e-07 58.9 113 46.0
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.4e-07 58.5 108 41.7
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.4e-07 58.5 115 39.1
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 3.4e-07 58.5 111 42.3
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.5e-07 58.2 106 40.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 4.5e-07 58.2 112 37.5
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 4.5e-07 58.2 108 41.7
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 5.9e-07 57.8 114 39.5
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 5.9e-07 57.8 116 48.3
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.9e-07 57.8 117 41.0
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 7.7e-07 57.4 108 39.8
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 109 39.4
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.0e-06 57.0 108 38.9
A03p42000 Brassica napus HOM05D004268 ORTHO05D004958 1.3e-06 56.6 109 56.0
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.3e-06 56.6 108 47.2
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-06 55.5 111 41.4
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 3.8e-06 55.1 109 41.3
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 3.8e-06 55.1 113 44.2
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 3.8e-06 55.1 109 37.6
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.0e-06 54.7 27 85.2
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 5.0e-06 54.7 119 37.0
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 6.5e-06 54.3 98 42.9
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 8.5e-06 53.9 106 41.5
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 8.5e-06 53.9 108 46.3


User provided reference genes

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