Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 3.4e-75 285.0 154 100.0
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 5.1e-23 111.7 106 58.5
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 5.1e-23 111.7 106 58.5
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 6.6e-23 111.3 120 53.3
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 8.7e-23 110.9 112 54.5
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 1.5e-22 110.2 106 57.5
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 1.9e-22 109.8 135 48.9
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 1.9e-22 109.8 100 59.0
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.5e-22 109.4 119 53.8
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 2.8e-21 105.9 119 50.4
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 2.8e-21 105.9 98 59.2
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 6.2e-21 104.8 136 49.3
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 8.1e-21 104.4 134 51.5
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 1.1e-20 104.0 115 55.7
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 1.4e-20 103.6 101 55.4
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.4e-20 103.6 119 51.3
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 1.8e-20 103.2 107 57.9
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 1.8e-20 103.2 128 47.7
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.8e-20 103.2 135 53.3
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 4.0e-20 102.1 101 54.5
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 4.0e-20 102.1 121 51.2
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 5.3e-20 101.7 121 51.2
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 1.2e-19 100.5 105 55.2
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 1.2e-19 100.5 102 58.8
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 1.5e-19 100.1 152 43.4
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 1.5e-19 100.1 105 55.2
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 1.5e-19 100.1 97 59.8
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 2.0e-19 99.8 143 48.3
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 2.0e-19 99.8 128 49.2
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 4.4e-19 98.6 105 54.3
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 4.4e-19 98.6 128 44.5
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 7.6e-19 97.8 134 49.3
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 3.8e-18 95.5 113 51.3
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 3.8e-18 95.5 120 47.5
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 6.4e-18 94.7 128 49.2
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 1.1e-17 94.0 136 47.8
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 1.9e-17 93.2 132 48.5
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 4.2e-17 92.0 116 50.9
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 9.3e-17 90.9 147 43.5
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 1.2e-16 90.5 104 51.0
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 2.1e-16 89.7 125 48.0
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 2.7e-16 89.4 97 51.5
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 2.7e-16 89.4 103 51.5
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 3.5e-16 89.0 142 42.3
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 6.0e-16 88.2 107 49.5
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.0e-15 87.4 136 46.3
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 1.3e-15 87.0 104 53.8
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 1.3e-15 87.0 158 42.4
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.7e-15 86.7 142 44.4
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 3.0e-15 85.9 102 51.0
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 3.0e-15 85.9 151 39.1
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 3.0e-15 85.9 97 51.5
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 3.0e-15 85.9 104 51.9
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 6.6e-15 84.7 123 47.2
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 6.6e-15 84.7 123 47.2
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 1.1e-14 84.0 131 45.0
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 1.1e-14 84.0 134 44.0
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 4.3e-14 82.0 140 42.9
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 4.3e-14 82.0 125 48.0
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 1.6e-13 80.1 96 50.0
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 2.8e-13 79.3 143 42.7
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 2.8e-13 79.3 143 42.7
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 3.6e-13 79.0 144 42.4
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 6.2e-13 78.2 118 45.8
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 1.1e-12 77.4 166 41.0
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 1.1e-12 77.4 166 41.0
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 1.1e-12 77.4 113 44.2
PGR102G2636 Punica granatum HOM05D007890 ORTHO05D009945 1.4e-12 77.0 124 42.7
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 2.4e-12 76.3 138 42.0
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 4.0e-12 75.5 113 45.1
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 1.2e-11 73.9 117 44.4
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 3.4e-11 72.4 111 45.9
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 9.9e-11 70.9 164 36.0
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 1.3e-10 70.5 132 39.4
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 1.3e-10 70.5 119 41.2
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 1.7e-10 70.1 105 46.7
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 2.2e-10 69.7 125 44.8
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 4.9e-10 68.6 102 48.0
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 1.8e-07 60.1 59 57.6
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 2.3e-07 59.7 133 39.1
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 3.9e-07 58.9 129 41.9
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 6.7e-07 58.2 73 46.6
Nn2g15343 Nelumbo nucifera HOM05D007890 ORTHO05D009945 1.5e-06 57.0 66 53.0
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 1.9e-06 56.6 105 41.0


User provided reference genes

Program Settings