Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.9e-254 882.1 468 100.0
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 2.9e-130 469.5 470 60.9
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 3.6e-128 462.6 463 55.7
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.0e-127 459.5 469 56.7
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 5.7e-126 455.3 489 55.0
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.7e-125 453.8 470 58.1
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.9e-122 443.0 470 55.7
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.8e-122 442.6 463 55.5
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.8e-122 442.6 449 58.1
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.1e-121 441.0 469 56.7
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.5e-121 439.9 463 55.3
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 4.7e-120 435.6 469 55.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.1e-120 435.3 471 54.8
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.4e-119 434.1 464 56.5
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.5e-118 430.6 469 55.2
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.0e-118 430.3 468 54.7
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 9.7e-118 427.9 469 54.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.4e-116 423.3 418 59.6
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.7e-114 417.2 453 53.6
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 2.9e-114 416.4 451 54.3
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 6.5e-114 415.2 451 54.5
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.9e-113 413.7 523 51.4
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.5e-113 413.3 420 58.8
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.4e-108 397.5 447 52.6
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.2e-106 390.2 464 50.0
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 6.5e-106 388.7 471 53.9
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 7.2e-105 385.2 467 48.8
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 1.6e-104 384.0 457 53.0
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.6e-104 382.9 464 52.6
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 4.7e-104 382.5 418 56.5
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.4e-103 380.9 512 48.6
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 8.8e-103 378.3 475 49.9
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.8e-100 370.5 417 55.2
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.4e-100 370.2 468 51.5
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 4.1e-100 369.4 403 55.3
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 5.4e-100 369.0 454 50.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 7.0e-100 368.6 457 50.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.2e-99 367.9 458 49.8
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.5e-99 365.9 454 49.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 4.5e-99 365.9 468 51.9
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 2.9e-98 363.2 450 49.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.9e-98 363.2 436 52.1
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 8.6e-98 361.7 452 49.6
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.9e-97 360.5 467 47.5
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 9.5e-97 358.2 448 51.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.1e-96 357.1 468 46.6
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.0e-95 354.8 320 62.2
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 5.7e-94 349.0 473 49.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 5.7e-94 349.0 450 49.6
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 5.7e-94 349.0 453 50.8
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 7.5e-94 348.6 447 47.7
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.9e-93 346.7 408 50.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 8.3e-93 345.1 447 47.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 8.3e-93 345.1 454 49.1
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.4e-92 344.4 447 48.3
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.4e-92 343.6 482 46.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.6e-91 340.9 497 45.3
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.0e-91 340.5 460 47.2
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.7e-91 340.1 460 47.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.5e-91 339.7 452 48.0
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.0e-90 338.2 414 51.7
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.3e-90 337.0 419 52.3
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.9e-90 336.7 418 50.7
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.9e-89 334.0 459 47.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.2e-88 331.3 473 46.7
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 3.6e-88 329.7 454 46.7
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 3.6e-88 329.7 468 45.7
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 3.6e-88 329.7 462 47.0
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 4.7e-88 329.3 467 46.3
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.0e-86 323.9 410 50.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.6e-86 323.6 473 45.9
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.6e-86 323.6 473 45.9
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 7.5e-86 322.0 423 48.9
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.2e-85 320.5 462 43.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.3e-85 318.5 434 47.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 3.2e-84 316.6 448 46.9
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 4.1e-84 316.2 470 43.6
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 7.0e-84 315.5 482 44.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 2.5e-81 307.0 466 44.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.2e-80 304.7 426 46.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.1e-79 301.6 451 45.7
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.1e-79 301.6 475 43.4
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.4e-79 301.2 450 43.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 6.8e-79 298.9 481 43.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 9.8e-78 295.0 467 43.0
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.7e-77 294.3 465 45.4
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.7e-77 294.3 411 46.7
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.7e-77 293.1 356 52.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 2.4e-76 290.4 493 42.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.2e-76 290.0 449 43.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 4.1e-76 289.7 443 47.0
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.8e-75 285.4 460 42.4
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 7.8e-75 285.4 342 49.4
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.9e-74 283.1 471 42.9
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 2.5e-73 280.4 340 50.9
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 7.3e-73 278.9 454 44.5
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.1e-72 277.3 469 43.9
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 3.6e-72 276.6 418 45.7
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 8.1e-72 275.4 411 45.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 2.0e-70 270.8 469 43.1
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.7e-69 266.5 453 41.9
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.2e-67 261.5 290 50.7
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.7e-66 257.7 418 43.5
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.6e-64 251.1 373 43.2
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.2e-61 240.7 301 51.5
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 1.6e-59 234.6 345 45.2
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 3.5e-59 233.4 217 59.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-58 231.5 191 62.3
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 2.3e-58 230.7 453 39.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.5e-57 228.0 472 39.2
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.5e-57 228.0 472 39.2
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 3.3e-57 226.9 445 38.7
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 3.6e-56 223.4 247 54.3
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-55 221.5 291 47.4
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-54 218.4 340 45.0
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 2.0e-54 217.6 430 40.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 6.4e-53 212.6 298 47.0
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.1e-50 203.0 296 44.9
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 5.3e-47 193.0 367 40.3
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.2e-43 181.8 261 42.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 4.6e-43 179.9 170 56.5
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 5.1e-42 176.4 219 50.2
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.7e-42 176.0 333 39.6
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.3e-41 173.7 349 39.3
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.9e-36 157.9 470 31.1
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.1e-31 140.6 161 48.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 4.1e-31 140.2 232 40.9
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.2e-30 138.7 134 55.2
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.5e-27 127.1 148 54.1
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-22 111.7 227 36.6
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 5.0e-21 106.7 161 50.9
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 5.5e-20 103.2 161 49.7
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.8e-15 88.2 85 57.6
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.5e-12 76.6 121 43.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 7.2e-12 76.3 103 44.7
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 7.9e-11 72.8 113 42.5
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.3e-10 71.2 185 34.6
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.3e-09 67.4 103 39.8
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.7e-09 66.6 130 40.8


User provided reference genes

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