Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.6e-126 456.1 229 100.0
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 5.1e-96 354.8 229 75.5
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 6.7e-96 354.4 229 77.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.1e-95 353.6 229 75.1
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 9.7e-95 350.5 231 74.9
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.3e-94 350.1 228 76.3
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.6e-94 349.7 229 76.4
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-94 349.4 229 75.5
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-94 349.4 229 75.5
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 8.2e-94 347.4 231 73.2
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 3.1e-93 345.5 229 74.7
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-93 344.7 229 75.1
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.0e-92 342.8 217 76.0
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.6e-92 342.4 229 75.5
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 3.4e-92 342.0 229 75.5
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 5.9e-92 341.3 230 74.8
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.0e-91 340.5 229 75.1
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 1.0e-91 340.5 229 75.1
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.7e-91 339.7 229 75.1
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.9e-91 339.0 229 75.5
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 3.8e-91 338.6 227 73.6
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 8.5e-91 337.4 229 73.8
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 8.5e-91 337.4 229 73.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 8.5e-91 337.4 229 74.7
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.5e-90 335.9 229 72.9
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 4.2e-90 335.1 227 74.4
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.2e-89 333.6 228 70.2
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.7e-89 332.4 229 73.4
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 4.6e-89 331.6 229 72.9
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 6.1e-89 331.3 228 71.9
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 6.1e-89 331.3 229 72.5
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 6.1e-89 331.3 224 73.2
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 3.0e-88 328.9 229 70.7
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 3.9e-88 328.6 229 71.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 3.9e-88 328.6 228 70.2
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 5.1e-88 328.2 228 69.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 6.7e-88 327.8 225 71.6
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 6.7e-88 327.8 231 71.4
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 6.7e-88 327.8 227 73.1
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.5e-87 326.6 217 76.5
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.0e-87 326.2 228 68.4
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 3.3e-87 325.5 228 72.8
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 5.7e-87 324.7 229 72.1
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 5.7e-87 324.7 229 72.1
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 7.4e-87 324.3 228 68.4
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 9.7e-87 323.9 223 70.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 9.7e-87 323.9 228 68.4
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 9.7e-87 323.9 229 72.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.7e-86 323.2 228 72.8
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.7e-86 323.2 228 68.4
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.7e-86 323.2 232 70.3
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.7e-86 323.2 222 72.5
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.8e-86 322.4 226 66.4
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.8e-86 322.4 228 69.3
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 2.8e-86 322.4 228 70.6
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 3.7e-86 322.0 253 68.0
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.7e-86 322.0 224 71.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.8e-86 321.6 229 72.1
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 8.2e-86 320.9 226 69.0
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 8.2e-86 320.9 228 68.0
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.1e-85 320.5 223 70.4
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.1e-85 320.5 225 71.6
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.4e-85 320.1 229 69.0
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.4e-85 320.1 232 66.4
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 1.8e-85 319.7 223 70.4
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 229 69.0
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 228 66.2
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 2.4e-85 319.3 225 69.8
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.4e-85 319.3 229 71.6
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.1e-85 318.9 232 65.5
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.1e-85 318.9 232 65.5
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 4.1e-85 318.5 223 70.4
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 5.3e-85 318.2 217 70.5
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 9.1e-85 317.4 227 67.4
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.2e-84 317.0 228 65.4
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.6e-84 315.8 230 70.9
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 4.5e-84 315.1 228 67.1
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 7.7e-84 314.3 228 67.5
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 7.7e-84 314.3 228 67.5
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.3e-83 313.5 223 70.9
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 1.3e-83 313.5 230 69.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 3.8e-83 312.0 225 66.2
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 5.0e-83 311.6 229 65.9
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.0e-83 311.6 229 70.3
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.9e-82 309.7 226 66.8
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.9e-82 309.7 228 67.1
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 3.2e-82 308.9 225 66.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.2e-82 308.9 221 67.0
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 5.5e-82 308.1 223 65.9
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.2e-81 307.0 224 68.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.6e-81 306.6 225 67.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.1e-81 306.2 223 66.8
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.6e-81 305.4 224 68.8
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 4.7e-81 305.1 222 67.6
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 6.1e-81 304.7 215 65.6
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 222 68.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.7e-80 301.2 222 68.0
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 6.7e-80 301.2 223 67.7
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.0e-79 299.7 222 67.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.3e-78 297.0 229 67.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 2.2e-78 296.2 224 66.1
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 8.2e-78 294.3 228 64.0
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.1e-77 293.9 226 64.6
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-77 293.5 228 64.0
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.8e-77 293.1 229 64.2
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.2e-76 290.4 361 47.6
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.5e-76 290.0 222 64.0
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 7.7e-76 287.7 330 50.6
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 7.7e-76 287.7 230 63.0
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 7.7e-76 287.7 223 61.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.3e-75 287.0 215 64.2
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.2e-75 286.2 223 61.0
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.9e-74 283.1 227 61.2
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.5e-74 282.7 222 64.0
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.4e-72 276.9 228 63.6
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.8e-72 276.6 228 64.0
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 6.7e-72 274.6 223 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 8.8e-72 274.2 223 59.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 5.7e-71 271.6 308 49.0
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 2.2e-70 269.6 224 58.9
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 9.1e-69 264.2 223 56.1
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 5.0e-67 258.5 153 81.0
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.5e-63 246.9 177 71.2
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 5.7e-63 245.0 227 55.1
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.8e-62 242.7 121 99.2
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 3.1e-61 239.2 153 75.2
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-58 230.3 152 72.4
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.2e-55 220.7 178 64.0
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 9.8e-55 217.6 152 69.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.5e-50 203.8 145 68.3
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 2.5e-50 203.0 204 54.9
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 4.7e-49 198.7 161 65.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 8.0e-49 198.0 130 73.1
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.0e-48 197.6 122 78.7
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 6.3e-46 188.3 228 48.7
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 9.2e-45 184.5 107 80.4
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 3.1e-40 169.5 111 70.3
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 3.1e-40 169.5 111 70.3
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 6.8e-40 168.3 99 79.8
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-37 160.6 122 67.2
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 3.2e-37 159.5 95 78.9
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.0e-36 156.8 118 66.1
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 9.5e-34 147.9 123 62.6
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 1.8e-32 143.7 222 37.4
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 3.7e-30 136.0 147 51.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.0e-27 127.9 112 59.8
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.5e-26 123.2 85 70.6
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 9.5e-26 121.3 132 54.5
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 4.9e-22 109.0 81 65.4
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.2e-13 79.7 57 70.2
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.3e-11 74.3 61 59.0
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 5.1e-11 72.4 188 32.4
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.3e-10 68.6 80 40.0
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 1.5e-07 60.8 48 62.5


User provided reference genes

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