Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 3.5e-75 285.0 159 100.0
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 9.9e-22 107.5 100 64.0
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.2e-20 102.4 65 69.2
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.5e-19 99.0 100 63.0
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.5e-19 99.0 65 64.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 7.8e-19 97.8 100 59.0
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.3e-18 97.1 65 69.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.0e-18 95.9 100 63.0
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 8.7e-18 94.4 100 58.0
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.1e-17 94.0 63 68.3
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-17 94.0 100 58.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.9e-17 93.2 64 64.1
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.3e-17 92.4 65 61.5
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 3.3e-17 92.4 62 67.7
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 5.6e-17 91.7 65 63.1
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 5.6e-17 91.7 100 56.0
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.6e-16 90.1 64 62.5
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.1e-16 89.7 65 60.0
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 8.1e-16 87.8 100 66.0
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.1e-15 87.4 63 63.5
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-15 87.4 63 63.5
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.4e-15 87.0 63 58.7
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.8e-15 86.7 63 61.9
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.8e-15 86.7 65 60.0
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.4e-15 86.3 65 61.5
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.4e-15 86.3 65 60.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.4e-14 82.4 63 60.3
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 3.4e-14 82.4 63 60.3
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 9.9e-14 80.9 63 58.7
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.3e-13 80.5 63 60.3
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.3e-13 80.5 64 57.8
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.7e-13 80.1 64 57.8
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.7e-13 80.1 54 68.5
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.7e-13 80.1 63 58.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 2.2e-13 79.7 65 56.9
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 3.8e-13 79.0 65 53.8
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 3.8e-13 79.0 65 53.8
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 3.8e-13 79.0 63 55.6
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 4.9e-13 78.6 63 57.1
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.4e-13 78.2 64 57.8
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 6.4e-13 78.2 65 52.3
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 6.4e-13 78.2 65 52.3
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 8.4e-13 77.8 64 56.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.1e-12 77.4 63 57.1
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.1e-12 77.4 64 57.8
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.1e-12 77.4 63 58.7
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.4e-12 77.0 65 50.8
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.9e-12 76.6 64 56.2
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 2.4e-12 76.3 64 54.7
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.4e-12 76.3 64 54.7
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.2e-12 75.9 63 57.1
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.4e-12 75.1 65 53.8
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 7.1e-12 74.7 64 51.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 7.1e-12 74.7 64 51.6
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 1.2e-11 73.9 65 49.2
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.2e-11 73.9 65 49.2
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.6e-11 73.6 65 49.2
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 1.6e-11 73.6 64 51.6
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-11 73.6 65 49.2
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 1.6e-11 73.6 65 46.2
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.6e-11 73.6 63 55.6
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.6e-11 73.6 65 49.2
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 2.1e-11 73.2 65 47.7
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-11 73.2 64 54.7
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-11 73.2 64 50.0
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 2.1e-11 73.2 64 54.7
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 2.1e-11 73.2 64 54.7
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.1e-11 73.2 63 55.6
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 3.5e-11 72.4 68 52.9
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 3.5e-11 72.4 65 44.6
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.6e-11 72.0 65 44.6
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-11 72.0 65 50.8
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 4.6e-11 72.0 64 53.1
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.6e-11 72.0 62 56.5
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 6.0e-11 71.6 62 54.8
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 7.9e-11 71.2 63 50.8
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 7.9e-11 71.2 64 53.1
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 7.9e-11 71.2 63 50.8
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 7.9e-11 71.2 63 50.8
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.7e-10 70.1 65 43.1
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-10 70.1 65 43.1
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-10 70.1 65 43.1
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-10 70.1 65 43.1
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.7e-10 70.1 65 43.1
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 1.7e-10 70.1 62 56.5
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.7e-10 70.1 63 52.4
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 2.3e-10 69.7 53 60.4
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.3e-10 69.7 65 43.1
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 2.3e-10 69.7 64 53.1
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 3.0e-10 69.3 62 56.5
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 5.1e-10 68.6 63 50.8
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 5.1e-10 68.6 62 50.0
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 6.6e-10 68.2 64 53.1
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 6.6e-10 68.2 64 51.6
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 6.6e-10 68.2 65 49.2
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.1e-09 67.4 65 43.1
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.9e-09 66.6 65 40.0
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.9e-09 66.6 65 40.0
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.9e-09 66.6 65 40.0
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 2.5e-09 66.2 62 54.8
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 3.3e-09 65.9 101 47.5
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 4.3e-09 65.5 65 50.8
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 4.3e-09 65.5 62 41.9
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 9.6e-09 64.3 63 49.2
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-08 63.9 65 38.5
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-08 63.9 65 38.5
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-08 63.9 65 38.5
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-08 63.5 65 38.5
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-08 63.2 65 38.5
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 2.8e-08 62.8 60 46.7
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 2.8e-08 62.8 74 45.9
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 3.6e-08 62.4 65 50.8
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 4.8e-08 62.0 65 38.5
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 4.8e-08 62.0 65 46.2
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 8.1e-08 61.2 63 46.0
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.1e-08 61.2 63 47.6
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 3.1e-07 59.3 65 44.6
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 4.0e-07 58.9 62 51.6
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 4.0e-07 58.9 65 44.6
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 6.9e-07 58.2 65 47.7
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 6.9e-07 58.2 65 47.7
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 1.5e-06 57.0 64 45.3
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.5e-06 57.0 63 46.0
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.5e-06 57.0 63 46.0
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 2.0e-06 56.6 63 46.0
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 5.8e-06 55.1 60 45.0
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 5.8e-06 55.1 64 45.3
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 9.9e-06 54.3 65 38.5


User provided reference genes

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