Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.6e-98 361.3 193 100.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 6.5e-52 208.0 194 63.9
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.9e-51 206.5 197 62.9
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.2e-51 205.7 197 60.4
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 4.2e-51 205.3 198 61.1
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.2e-50 203.8 198 61.6
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.0e-49 200.7 195 61.5
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 6.8e-49 198.0 194 59.3
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 8.8e-49 197.6 191 58.1
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.2e-48 197.2 200 58.5
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 5.7e-48 194.9 193 57.0
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.5e-48 194.5 191 58.1
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.7e-47 193.4 193 57.5
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.7e-47 193.4 198 57.1
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 2.8e-47 192.6 198 57.1
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.7e-47 192.2 196 62.8
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 6.3e-47 191.4 194 58.2
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.1e-46 188.7 202 57.9
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 1.2e-45 187.2 195 59.0
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 4.5e-45 185.3 209 55.5
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 2.2e-44 183.0 197 54.3
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.0e-44 181.8 198 54.0
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 8.5e-44 181.0 196 55.6
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.5e-43 179.5 196 55.6
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 4.2e-43 178.7 193 56.5
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 5.5e-43 178.3 191 58.1
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.7e-42 176.0 191 55.0
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 8.0e-42 174.5 194 54.6
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.0e-41 174.1 193 54.9
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.8e-41 173.3 212 50.5
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 2.3e-41 172.9 193 54.9
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 3.0e-41 172.6 193 53.9
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.0e-41 172.6 197 53.3
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.0e-41 172.2 193 54.4
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.2e-41 171.8 193 56.0
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 8.8e-41 171.0 189 55.6
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 8.8e-41 171.0 218 50.5
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 8.8e-41 171.0 195 52.8
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.2e-40 170.6 195 55.4
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.2e-40 170.6 197 54.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-40 170.2 193 52.8
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.5e-40 170.2 200 53.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-40 169.9 193 53.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-40 169.9 193 53.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.0e-40 169.9 193 53.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.0e-40 169.9 199 53.3
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.6e-40 169.5 193 53.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.6e-40 169.5 193 55.4
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.4e-40 169.1 196 54.6
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.4e-40 168.7 197 50.8
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 5.7e-40 168.3 194 56.2
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.7e-39 166.8 193 54.4
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 8.3e-39 164.5 196 54.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 8.3e-39 164.5 208 47.1
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.4e-38 163.7 210 49.5
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.4e-38 163.7 212 50.5
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.8e-38 163.3 215 48.4
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 3.1e-38 162.5 214 47.2
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 4.1e-38 162.2 191 51.8
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-38 162.2 193 54.4
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.2e-37 160.6 198 54.5
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.5e-37 158.7 193 52.8
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.0e-36 157.5 212 48.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.0e-36 157.5 192 50.0
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.0e-36 155.2 206 46.6
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.5e-35 153.7 209 47.8
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.9e-35 153.3 212 46.2
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.5e-35 152.9 194 52.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-35 152.1 216 46.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.2e-35 152.1 194 52.1
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 4.2e-35 152.1 227 43.2
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 7.2e-35 151.4 211 50.2
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 7.2e-35 151.4 216 47.7
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 9.5e-35 151.0 193 48.2
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-34 150.6 176 51.7
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-34 150.6 185 53.0
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.2e-34 150.6 205 47.3
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.6e-34 150.2 213 49.8
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 1.6e-34 150.2 203 50.2
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.1e-34 149.8 214 48.6
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.1e-34 149.8 196 46.9
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.8e-34 149.4 216 45.8
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 3.6e-34 149.1 205 49.3
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.7e-34 148.7 194 51.0
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.7e-34 148.7 194 51.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 4.7e-34 148.7 220 45.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 6.1e-34 148.3 180 52.8
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 6.1e-34 148.3 203 49.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 8.0e-34 147.9 220 45.9
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.0e-33 147.5 206 49.0
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-33 147.1 194 50.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 2.3e-33 146.4 215 49.3
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-33 146.4 194 51.0
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 3.0e-33 146.0 173 56.1
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 4.0e-33 145.6 186 48.4
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.0e-33 145.6 200 51.0
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.8e-33 144.8 196 50.0
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.5e-32 143.7 199 44.7
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.5e-32 143.7 209 45.0
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.4e-32 142.5 214 41.1
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.7e-32 141.7 211 46.4
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 9.8e-32 141.0 219 42.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.2e-31 139.8 202 45.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-31 139.4 176 50.6
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 4.9e-31 138.7 186 47.3
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 4.9e-31 138.7 189 46.0
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.9e-31 138.7 193 48.2
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 6.3e-31 138.3 203 46.3
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 8.3e-31 137.9 176 50.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.1e-30 137.5 198 46.5
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.1e-30 135.6 197 45.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.2e-29 134.0 171 52.0
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 1.2e-29 134.0 211 45.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.3e-28 130.6 194 47.4
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.9e-28 129.4 194 47.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 8.6e-28 127.9 222 42.3
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.1e-27 127.5 208 44.7
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-27 127.5 207 44.4
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.1e-27 127.5 241 39.8
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-26 124.0 219 41.6
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.6e-26 123.6 214 43.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 8.0e-26 121.3 218 41.7
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.4e-25 120.6 193 43.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.3e-25 119.8 181 44.2
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 2.3e-25 119.8 167 49.7
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 4.0e-25 119.0 191 45.0
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 6.8e-25 118.2 89 71.9
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 8.9e-25 117.9 184 42.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 2.6e-24 116.3 245 37.1
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 7.5e-24 114.8 232 35.8
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 9.8e-24 114.4 196 44.4
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 2.9e-23 112.8 211 39.8
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 4.9e-23 112.1 191 41.9
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 6.4e-23 111.7 194 43.8
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-22 110.5 187 41.2
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-22 110.5 187 41.2
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.4e-22 110.5 187 41.2
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-22 110.5 188 41.5
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 1.9e-22 110.2 202 43.1
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.1e-22 109.0 191 40.3
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 9.2e-22 107.8 202 39.1
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.0e-21 106.7 181 40.9
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 6.0e-21 105.1 208 37.0
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.3e-20 104.0 184 39.7
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.3e-20 104.0 207 38.2
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.3e-20 103.2 189 41.3
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.3e-20 103.2 191 39.8
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.9e-20 102.4 81 71.6
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 6.6e-20 101.7 75 77.3
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-19 99.4 184 41.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.3e-19 99.4 184 41.8
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.3e-19 99.0 115 49.6
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 7.3e-19 98.2 177 40.1
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.3e-19 98.2 193 35.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 9.5e-19 97.8 185 39.5
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 9.5e-19 97.8 185 39.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.7e-18 95.5 193 36.3
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-17 94.0 190 37.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 8.9e-17 91.3 178 42.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 9.8e-16 87.8 225 34.7
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.2e-15 86.7 197 34.0
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 3.7e-15 85.9 155 43.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.2e-13 80.9 75 57.3
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 1.2e-13 80.9 167 38.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 4.6e-13 79.0 185 35.7
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 8.6e-12 74.7 181 34.3
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.5e-11 73.9 197 36.0
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 3.3e-11 72.8 206 35.4
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 6.2e-10 68.6 196 31.6
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.1e-09 67.8 117 36.8
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.1e-09 67.8 191 33.5
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.3e-09 66.6 55 65.5
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.3e-09 66.6 69 58.0
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.2e-08 64.3 54 61.1
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.7e-07 60.5 178 33.1
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 6.4e-07 58.5 215 27.4


User provided reference genes

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