Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 1.1e-153 546.6 278 100.0
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.4e-111 406.0 246 80.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 4.0e-111 405.2 291 73.2
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 2.0e-110 402.9 291 70.8
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 5.8e-110 401.4 270 75.6
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.3e-109 400.2 276 74.3
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.3e-109 400.2 247 79.8
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.1e-108 397.1 238 80.3
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.4e-108 396.0 284 73.6
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.4e-108 396.0 263 75.7
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 4.2e-108 395.2 278 75.2
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.4e-108 394.8 264 75.0
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.4e-108 394.8 258 76.7
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 7.1e-108 394.4 258 76.4
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 9.2e-108 394.0 248 79.8
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.6e-107 393.3 245 80.8
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.1e-107 392.9 286 71.0
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 3.5e-107 392.1 257 77.0
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.3e-106 390.2 248 78.6
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 6.6e-106 387.9 263 74.1
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 6.6e-106 387.9 263 74.1
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 8.7e-106 387.5 238 79.4
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 8.7e-106 387.5 263 73.4
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.5e-105 386.7 245 78.8
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 2.5e-105 386.0 251 76.9
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.3e-105 385.2 251 76.9
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.3e-105 384.4 245 77.6
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 9.6e-105 384.0 241 76.8
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.1e-104 382.9 282 70.2
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 2.8e-104 382.5 281 71.2
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.8e-104 382.5 242 77.7
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 2.8e-104 382.5 244 76.6
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 4.7e-104 381.7 293 68.3
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 4.7e-104 381.7 257 73.2
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 8.1e-104 380.9 252 76.6
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.8e-103 379.8 236 78.8
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.2e-102 377.1 281 70.8
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.5e-102 376.7 281 70.5
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 2.0e-102 376.3 281 70.1
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 2.6e-102 375.9 279 69.2
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 3.4e-102 375.6 282 70.6
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 5.8e-102 374.8 279 71.0
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 5.8e-102 374.8 282 70.6
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 7.6e-102 374.4 278 70.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 7.6e-102 374.4 257 73.2
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 9.9e-102 374.0 278 70.1
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.7e-101 373.2 249 75.9
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.7e-101 373.2 281 70.1
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 1.7e-101 373.2 244 73.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 2.2e-101 372.9 245 73.1
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 3.8e-101 372.1 282 70.2
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 4.9e-101 371.7 299 66.6
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.4e-100 370.2 279 69.5
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 2.4e-100 369.4 281 70.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 3.2e-100 369.0 239 74.9
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 5.4e-100 368.2 280 68.6
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 7.1e-100 367.9 241 74.7
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 7.1e-100 367.9 272 71.0
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.2e-99 367.1 257 71.6
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.6e-99 366.7 242 74.4
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.1e-99 366.3 332 62.0
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.5e-99 365.5 244 73.8
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.3e-98 363.6 275 68.7
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.7e-98 363.2 248 71.0
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.9e-98 362.1 242 74.0
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 5.1e-98 361.7 265 68.3
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 8.7e-98 360.9 263 70.0
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.9e-97 359.8 242 74.0
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.9e-97 359.8 249 70.3
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 2.5e-97 359.4 249 71.5
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 3.3e-97 359.0 296 62.8
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 4.3e-97 358.6 272 65.4
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 9.6e-97 357.5 272 65.1
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.3e-96 357.1 247 70.4
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.6e-96 356.7 257 69.6
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.1e-96 356.3 249 70.7
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 3.6e-96 355.5 252 70.2
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.8e-95 353.2 214 79.0
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.8e-95 353.2 248 69.8
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 4.0e-95 352.1 228 75.0
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 5.3e-95 351.7 252 69.8
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 6.9e-95 351.3 280 65.4
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.5e-94 350.1 248 69.8
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 7.6e-94 347.8 258 65.5
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 9.9e-94 347.4 287 64.8
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.3e-93 347.1 246 69.5
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 2.9e-93 345.9 250 66.0
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.0e-90 337.4 254 66.9
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.8e-90 336.7 271 64.6
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 2.8e-88 329.3 272 63.6
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 2.6e-86 322.8 253 66.8
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.4e-86 322.4 267 62.9
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 1.3e-85 320.5 222 72.1
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 4.9e-85 318.5 276 62.0
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 2.5e-84 316.2 223 71.7
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 2.5e-84 316.2 204 77.5
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.2e-84 315.8 257 63.4
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 8.7e-82 307.8 227 71.8
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 1.1e-81 307.4 267 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 6.2e-80 301.6 236 63.1
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.4e-79 299.7 267 58.1
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.0e-78 296.6 206 69.4
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.5e-73 279.6 186 74.7
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 7.4e-73 278.1 258 55.0
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.3e-72 277.3 204 69.1
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.6e-72 276.9 242 59.1
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 7.9e-67 258.1 248 56.9
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.4e-60 237.3 139 79.9
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.8e-47 193.7 149 65.1
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 3.1e-47 193.0 217 47.5
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 9.1e-47 191.4 229 46.3
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 5.3e-39 165.6 214 41.6
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.7e-37 160.6 160 57.5
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.1e-31 139.8 88 73.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.0e-29 134.8 137 54.7
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 1.1e-20 104.8 83 60.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 5.6e-20 102.4 56 83.9
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 7.3e-20 102.1 112 52.7
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 6.1e-19 99.0 68 66.2
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 8.0e-19 98.6 62 74.2
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 8.0e-19 98.6 136 44.9
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.7e-16 90.9 57 75.4
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.4e-15 87.8 61 73.8
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 2.4e-15 87.0 63 63.5
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 5.4e-15 85.9 170 37.1
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 6.0e-14 82.4 63 65.1
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.0e-13 81.6 60 65.0
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.0e-13 81.6 175 36.0
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.9e-12 77.4 62 61.3
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.9e-12 77.4 51 70.6
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.8e-11 73.6 53 64.2
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 6.8e-10 68.9 43 72.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 3.4e-09 66.6 83 45.8


User provided reference genes

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