Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 6.8e-80 300.4 135 100.0
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.5e-68 261.5 135 83.7
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.0e-67 260.0 135 83.0
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 1.3e-67 259.6 135 83.0
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.3e-67 259.6 135 83.0
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.3e-67 259.6 135 84.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 6.6e-67 257.3 135 82.2
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.1e-66 256.5 135 81.5
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.1e-66 256.5 135 83.0
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 4.3e-66 254.6 135 83.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 82.2
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.8e-65 251.9 135 80.7
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 8.0e-65 250.4 147 77.6
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-64 249.6 135 80.0
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.8e-64 249.2 134 79.1
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 3.0e-64 248.4 135 80.0
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 6.8e-64 247.3 134 78.4
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 6.8e-64 247.3 159 66.7
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 8.9e-64 246.9 145 74.5
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.5e-63 246.1 135 79.3
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.5e-63 246.1 135 79.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.6e-63 245.4 135 79.3
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 4.4e-63 244.6 147 74.1
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 4.4e-63 244.6 145 73.1
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 7.5e-63 243.8 148 72.3
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 7.5e-63 243.8 135 80.0
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 7.5e-63 243.8 150 72.7
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 7.5e-63 243.8 135 78.5
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 9.8e-63 243.4 153 70.6
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.3e-62 243.0 135 76.3
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.2e-62 242.3 150 71.3
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-62 241.1 137 78.1
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-62 241.1 137 78.1
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 4.9e-62 241.1 137 78.1
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 4.9e-62 241.1 148 71.6
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.1e-61 240.0 135 75.6
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.1e-61 240.0 135 75.6
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.4e-61 239.6 152 69.7
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.4e-61 238.8 123 83.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.4e-61 238.8 135 76.3
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 3.2e-61 238.4 135 74.8
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.2e-61 238.4 135 74.8
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.2e-61 238.4 153 69.9
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 4.1e-61 238.0 148 70.9
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 5.4e-61 237.7 135 75.6
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 7.0e-61 237.3 135 74.8
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 7.0e-61 237.3 135 74.8
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 9.2e-61 236.9 136 75.7
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 9.2e-61 236.9 136 75.7
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 9.2e-61 236.9 130 79.2
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.2e-60 236.5 135 74.8
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.2e-60 236.5 123 82.1
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 1.2e-60 236.5 153 69.9
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 1.6e-60 236.1 153 69.9
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 2.0e-60 235.7 135 74.8
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 2.0e-60 235.7 148 71.6
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.7e-60 235.3 135 74.1
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 4.6e-60 234.6 136 74.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 4.6e-60 234.6 147 67.3
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 74.1
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 74.1
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 5.9e-60 234.2 135 73.3
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 5.9e-60 234.2 148 73.0
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 7.8e-60 233.8 149 69.8
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.7e-59 232.6 123 80.5
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.7e-59 232.6 135 74.8
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.0e-59 231.9 147 66.7
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.0e-59 231.9 134 76.9
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.0e-59 231.1 134 76.9
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 5.0e-59 231.1 135 74.8
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 6.6e-59 230.7 135 72.6
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.1e-58 229.9 135 75.6
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.1e-58 229.9 153 68.6
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.5e-58 229.6 136 75.0
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.3e-58 228.4 144 72.2
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 4.3e-58 228.0 149 67.8
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 5.6e-58 227.6 135 73.3
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 5.6e-58 227.6 132 75.8
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 7.3e-58 227.3 122 79.5
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 1.2e-57 226.5 136 74.3
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.2e-57 226.5 147 70.1
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 1.6e-57 226.1 135 72.6
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 2.8e-57 225.3 153 65.4
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 2.8e-57 225.3 153 65.4
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 3.6e-57 224.9 157 65.0
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 3.6e-57 224.9 133 74.4
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 4.7e-57 224.6 169 61.5
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.7e-57 224.6 159 64.8
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 6.2e-57 224.2 149 65.8
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 8.0e-57 223.8 145 68.3
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 2.0e-55 219.2 142 68.3
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 3.4e-55 218.4 139 69.1
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 7.5e-55 217.2 123 74.0
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.7e-54 216.1 130 70.0
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.2e-54 215.7 123 74.8
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 6.4e-54 214.2 130 70.0
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.4e-53 212.2 126 71.4
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.4e-53 212.2 134 67.2
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 6.0e-52 207.6 131 69.5
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 7.8e-52 207.2 151 63.6
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 7.8e-52 207.2 143 64.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 7.8e-52 207.2 133 69.2
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.3e-51 206.5 133 67.7
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 6.6e-51 204.1 135 70.4
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 1.9e-50 202.6 131 67.9
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 7.3e-50 200.7 154 60.4
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.4e-48 196.4 152 59.9
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.4e-48 196.4 152 59.9
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.0e-47 192.6 123 69.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 2.2e-46 189.1 160 56.9
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 9.2e-45 183.7 173 52.0
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.7e-41 171.4 119 59.7
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.1e-40 170.2 105 69.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 9.9e-39 163.7 136 53.7
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.2e-38 162.5 124 58.1
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.9e-37 159.5 126 54.0
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.6e-34 147.9 87 75.9
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.1e-33 146.0 144 46.5
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 1.7e-30 136.3 72 80.6
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 3.9e-27 125.2 59 89.8
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 5.1e-27 124.8 58 89.7
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.1e-20 102.8 126 42.1
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.8e-16 89.7 81 50.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.4e-16 89.4 54 64.8
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.5e-15 86.7 74 55.4
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-15 86.7 80 50.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 3.4e-15 85.5 80 48.8
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 4.9e-14 81.6 105 39.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.1e-13 80.5 111 37.8
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.1e-12 76.3 75 50.7
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.0e-11 73.9 111 35.1
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 6.7e-11 71.2 40 70.0
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 5.6e-10 68.2 49 55.1
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 2.8e-09 65.9 50 54.0
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.7e-09 65.5 53 50.9
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 53 52.8
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 50 56.0
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 6.2e-09 64.7 50 56.0
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 1.8e-08 63.2 56 53.6
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 6.9e-08 61.2 102 30.4
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 2.6e-07 59.3 69 42.0


User provided reference genes

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