Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.4e-169 599.0 353 100.0
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.1e-96 356.7 285 75.8
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 4.6e-96 355.5 306 69.3
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 7.9e-96 354.8 285 72.3
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 5.1e-95 352.1 285 72.3
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.1e-94 350.9 287 69.7
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.1e-94 350.9 283 71.7
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.5e-94 350.5 283 71.7
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.5e-94 350.5 327 66.1
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.9e-94 350.1 285 72.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 2.5e-94 349.7 291 69.4
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 3.3e-94 349.4 283 73.5
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.3e-94 349.0 285 71.2
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.3e-94 349.0 292 70.9
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 5.7e-94 348.6 285 73.3
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 5.7e-94 348.6 285 73.3
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 5.7e-94 348.6 284 72.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.4e-94 348.2 286 72.4
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.4e-94 348.2 287 70.7
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 1.3e-93 347.4 312 67.6
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.3e-93 347.4 283 71.4
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.2e-93 344.7 283 72.1
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.1e-92 342.8 350 61.1
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 4.1e-92 342.4 285 71.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 4.1e-92 342.4 285 71.6
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 5.3e-92 342.0 285 71.6
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 5.3e-92 342.0 283 71.0
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 5.3e-92 342.0 283 70.7
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 9.0e-92 341.3 299 68.9
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 9.0e-92 341.3 289 70.9
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.5e-91 340.5 284 72.2
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.0e-91 340.1 285 71.6
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 4.5e-91 339.0 287 70.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.5e-91 339.0 311 66.6
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 7.6e-91 338.2 289 69.9
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.3e-90 337.4 285 70.9
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.2e-90 336.7 285 69.5
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.9e-90 336.3 237 69.6
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 3.8e-90 335.9 282 70.9
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 6.5e-90 335.1 285 70.5
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.5e-90 335.1 285 70.5
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 6.5e-90 335.1 282 70.9
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.1e-89 334.3 326 65.0
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.9e-89 333.6 285 69.1
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 1.9e-89 333.6 285 70.5
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.2e-89 332.8 287 71.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.3e-89 331.3 285 68.8
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-88 330.5 320 64.4
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.7e-88 329.7 280 70.4
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.6e-88 329.3 297 68.0
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-87 327.4 292 68.2
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 3.9e-87 325.9 221 71.9
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 1.5e-86 323.9 287 68.6
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.5e-86 323.2 237 67.9
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 4.3e-86 322.4 295 66.8
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 7.4e-86 321.6 286 68.2
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 9.7e-86 321.2 297 66.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 1.6e-85 320.5 235 65.5
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-85 320.5 325 62.2
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.3e-85 318.5 285 66.3
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 8.2e-85 318.2 288 67.0
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.4e-84 316.6 291 67.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 9.1e-84 314.7 282 67.7
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.0e-83 313.5 270 59.6
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.5e-83 312.4 235 66.0
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.9e-83 312.0 284 62.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.7e-82 310.5 286 64.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.7e-82 310.5 340 57.4
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.0e-82 308.9 286 65.0
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 5.0e-82 308.9 324 62.0
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 5.0e-82 308.9 285 68.1
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 3.2e-81 306.2 237 63.7
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 5.5e-81 305.4 287 67.2
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 7.2e-81 305.1 283 66.4
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 9.4e-81 304.7 293 63.8
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 9.4e-81 304.7 285 64.6
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.2e-80 304.3 237 63.7
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 1.6e-80 303.9 235 63.8
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.6e-80 302.4 282 64.5
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 6.1e-80 302.0 240 63.3
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 1.8e-79 300.4 285 64.9
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 1.8e-79 300.4 243 63.0
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.8e-79 300.4 258 60.1
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.0e-79 299.7 243 63.0
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 1.5e-78 297.4 238 63.0
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.0e-78 297.0 286 62.6
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 2.0e-78 297.0 232 62.1
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 4.4e-78 295.8 240 62.5
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 5.7e-78 295.4 235 63.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.4e-78 295.0 235 61.3
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 3.7e-77 292.7 238 62.2
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 8.2e-77 291.6 232 60.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.1e-76 291.2 237 62.9
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.4e-76 290.8 234 62.8
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.0e-75 287.0 303 60.1
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.5e-75 285.8 298 61.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 7.7e-75 285.0 210 67.1
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.7e-74 283.9 209 66.5
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.7e-74 283.9 294 62.2
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 2.9e-74 283.1 235 60.9
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 6.5e-74 282.0 300 63.7
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 8.5e-74 281.6 300 64.0
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.2e-72 277.7 244 58.6
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.2e-72 277.7 300 61.3
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 6.1e-72 275.4 232 59.5
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.4e-71 274.2 299 59.5
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.4e-71 274.2 271 66.4
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 5.2e-71 272.3 240 58.3
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.5e-70 270.8 284 63.4
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 3.3e-70 269.6 301 62.5
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 3.3e-70 269.6 303 62.4
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 9.7e-70 268.1 241 57.3
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.8e-69 265.8 217 59.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.1e-68 264.6 241 60.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.6e-67 260.8 234 59.0
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.8e-66 256.1 286 62.2
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 8.5e-66 255.0 232 56.5
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.7e-64 250.0 193 63.2
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.8e-63 245.0 242 66.5
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 1.5e-62 244.2 227 56.4
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 2.2e-61 240.4 230 67.4
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 5.3e-60 235.7 227 65.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 1.6e-59 234.2 240 52.9
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 7.2e-57 225.3 227 64.8
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.4e-55 221.1 234 59.0
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 3.0e-55 219.9 236 53.8
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.5e-54 217.6 238 52.9
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.1e-52 211.5 193 57.5
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.4e-52 210.3 240 49.2
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.5e-51 206.5 217 52.5
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.1e-44 184.9 195 51.8
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 6.6e-42 175.6 259 54.1
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.7e-38 162.5 122 64.8
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.9e-31 138.7 240 36.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.6e-30 137.1 245 37.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-27 127.9 243 35.8
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 6.6e-26 122.5 137 46.0
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.1e-25 121.7 140 52.1
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.2e-24 118.2 226 43.4
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-23 114.4 225 36.0
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 6.8e-23 112.5 239 33.1
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.9e-23 112.1 222 35.6
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.4e-22 110.2 237 36.3
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.4e-22 110.2 236 40.3
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.4e-22 109.8 233 34.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 5.8e-22 109.4 224 34.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.3e-21 108.2 227 45.8
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.3e-21 108.2 53 90.6
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-21 108.2 234 32.9
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 8.3e-21 105.5 235 34.0
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 3.2e-20 103.6 237 33.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.1e-19 100.9 238 34.0
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.8e-19 99.0 239 33.1
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 3.0e-18 97.1 225 33.8
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.5e-17 94.7 241 32.4
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.9e-17 94.4 228 34.2
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 7.3e-17 92.4 238 40.8
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 1.2e-16 91.7 242 39.3
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 3.6e-16 90.1 56 71.4
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.8e-15 87.8 245 32.2
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.4e-14 83.6 53 69.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.4e-12 76.3 207 32.4
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 9.2e-12 75.5 46 69.6
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.2e-11 75.1 136 36.8
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 3.0e-10 70.5 128 35.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.9e-10 70.1 213 28.6
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.5e-09 67.4 51 56.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 9.6e-09 65.5 48 58.3
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.6e-08 64.7 213 28.2
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 1.8e-07 61.2 245 28.6
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.8e-07 61.2 41 63.4
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.4e-07 60.8 51 51.0
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.0e-06 57.8 58 44.8
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 3.4e-06 57.0 154 27.9
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 3.4e-06 57.0 45 60.0


User provided reference genes

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