Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 7.9e-211 736.9 378 100.0
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.7e-179 632.1 378 85.2
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 3.6e-179 631.7 382 86.6
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 1.8e-178 629.4 385 83.4
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.5e-177 626.3 349 89.4
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 1.5e-177 626.3 349 89.4
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 7.5e-177 624.0 357 88.2
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 2.8e-176 622.1 382 84.0
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.8e-176 622.1 345 89.9
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 3.7e-176 621.7 379 84.7
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 6.3e-176 620.9 372 84.7
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 8.3e-176 620.5 353 88.4
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 8.3e-176 620.5 351 88.6
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.1e-175 620.2 378 84.4
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.1e-175 620.2 350 88.9
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 2.4e-175 619.0 378 83.3
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 3.1e-175 618.6 370 85.9
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 5.4e-175 617.8 381 84.5
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 5.4e-175 617.8 381 83.5
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 1.6e-174 616.3 347 89.9
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 1.6e-174 616.3 348 89.1
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 3.5e-174 615.1 350 89.1
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 1.0e-173 613.6 348 89.1
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 1.0e-173 613.6 348 87.9
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 1.7e-173 612.8 353 89.0
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 2.2e-173 612.5 368 85.1
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 2.2e-173 612.5 365 85.2
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 2.2e-173 612.5 348 87.1
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 6.5e-173 610.9 352 87.8
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 1.5e-172 609.8 378 82.5
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 1.5e-172 609.8 346 88.2
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 1.9e-172 609.4 355 85.9
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.5e-172 609.0 378 82.5
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 2.5e-172 609.0 375 82.9
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 2.5e-172 609.0 353 86.1
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 3.2e-172 608.6 348 86.5
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 3.2e-172 608.6 349 86.2
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 3.2e-172 608.6 362 83.4
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 4.2e-172 608.2 378 82.8
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 4.2e-172 608.2 353 85.6
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 4.2e-172 608.2 381 81.9
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 7.2e-172 607.4 385 81.0
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 9.4e-172 607.1 378 82.5
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 9.4e-172 607.1 348 87.6
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 1.6e-171 606.3 366 84.2
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 1.6e-171 606.3 366 84.2
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.1e-171 605.9 345 88.7
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 2.1e-171 605.9 382 81.4
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 2.7e-171 605.5 384 81.2
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 3.6e-171 605.1 347 87.0
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 6.1e-171 604.4 378 81.7
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 8.0e-171 604.0 378 82.0
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 8.0e-171 604.0 380 82.4
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 8.0e-171 604.0 378 81.0
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 1.0e-170 603.6 347 87.0
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 1.0e-170 603.6 370 83.5
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 1.0e-170 603.6 383 80.9
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 1.4e-170 603.2 376 81.4
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.4e-170 603.2 378 81.5
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 1.8e-170 602.8 348 85.6
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 1.8e-170 602.8 379 81.5
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 2.3e-170 602.4 355 85.6
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 2.3e-170 602.4 347 87.9
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 3.0e-170 602.1 345 87.5
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 4.0e-170 601.7 348 85.9
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 4.0e-170 601.7 368 83.4
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 5.2e-170 601.3 366 84.2
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 6.8e-170 600.9 355 85.4
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 6.8e-170 600.9 355 85.4
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 6.8e-170 600.9 355 85.4
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 6.8e-170 600.9 378 81.2
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 8.8e-170 600.5 355 85.6
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 8.8e-170 600.5 345 87.5
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 1.2e-169 600.1 378 81.2
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 1.5e-169 599.7 347 86.7
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 2.0e-169 599.4 353 86.7
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 2.6e-169 599.0 379 81.3
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 4.4e-169 598.2 382 80.4
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 4.4e-169 598.2 360 84.7
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.8e-169 597.0 366 83.3
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.8e-169 597.0 366 83.3
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 9.8e-169 597.0 366 82.8
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 9.8e-169 597.0 364 83.0
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 1.3e-168 596.7 382 80.1
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 1.7e-168 596.3 382 80.1
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 1.7e-168 596.3 353 85.0
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.8e-168 595.5 366 83.3
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 4.9e-168 594.7 348 84.5
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.9e-168 594.7 354 85.0
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 6.3e-168 594.3 347 86.2
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 8.3e-168 594.0 348 84.2
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 1.1e-167 593.6 406 76.8
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 1.4e-167 593.2 351 83.8
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 1.8e-167 592.8 376 79.3
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 1.8e-167 592.8 379 81.3
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 1.8e-167 592.8 345 86.1
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 7.0e-167 590.9 362 83.1
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 4.5e-166 588.2 353 83.9
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 5.9e-166 587.8 347 85.6
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 5.9e-166 587.8 347 85.6
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 5.9e-166 587.8 365 81.6
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 1.7e-165 586.3 347 84.4
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 2.3e-165 585.9 347 85.0
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 2.3e-165 585.9 354 83.6
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 3.8e-165 585.1 367 83.4
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 1.1e-164 583.6 370 81.4
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 9.5e-164 580.5 345 83.8
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 2.8e-163 578.9 352 82.7
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 4.0e-162 575.1 347 82.1
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 3.4e-161 572.0 347 81.6
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 3.7e-160 568.5 322 88.2
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 1.2e-158 563.5 369 77.0
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 1.0e-157 560.5 364 76.9
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 1.3e-157 560.1 351 79.8
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 1.1e-156 557.0 362 80.9
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 1.1e-156 557.0 364 76.6
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 1.6e-155 553.1 368 78.5
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 2.1e-155 552.7 345 81.2
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 8.0e-155 550.8 353 78.2
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 5.8e-153 544.7 347 81.0
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 2.9e-152 542.3 378 73.8
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 5.2e-146 521.5 368 74.7
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 1.5e-145 520.0 339 77.0
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 5.8e-145 518.1 296 87.8
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 3.0e-141 505.8 341 77.1
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 7.3e-140 501.1 294 84.4
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 1.1e-132 477.2 356 67.4
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 2.4e-130 469.5 361 67.6
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.1e-123 446.4 303 76.9
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 5.1e-117 425.2 306 70.3
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 1.7e-112 410.2 225 91.1
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 4.8e-91 339.0 193 89.1
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 4.1e-90 335.9 186 90.3
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.7e-67 259.6 174 74.1
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 3.1e-66 256.5 174 73.0
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 7.2e-55 218.8 240 54.6
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 1.8e-53 214.2 118 87.3
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 6.8e-53 212.2 118 86.4
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.4e-52 209.5 170 67.1
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 4.4e-52 209.5 170 67.1
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.7e-51 207.6 138 73.9
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 3.7e-51 206.5 177 62.7
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.5e-47 193.7 125 74.4
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 7.3e-47 192.2 121 76.9
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 5.6e-39 166.0 97 82.5
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 9.5e-39 165.2 102 81.4
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 9.8e-36 155.2 119 73.9
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 7.0e-34 149.1 113 66.4
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 2.3e-32 144.1 78 91.0
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.5e-31 140.6 77 88.3
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 2.5e-31 140.6 78 87.2
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.5e-31 138.7 85 77.6
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.6e-30 136.7 127 57.5
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 6.2e-30 136.0 88 77.3
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.1e-29 135.2 83 77.1
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.1e-29 135.2 84 76.2
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 1.8e-29 134.4 68 92.6
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 1.2e-28 131.7 71 90.1
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 1.5e-28 131.3 84 77.4
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 2.6e-28 130.6 72 87.5
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 9.2e-26 122.1 65 89.2
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 4.1e-18 96.7 59 78.0
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.1e-17 94.4 52 84.6
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 2.7e-17 94.0 81 64.2
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 1.1e-15 88.6 375 26.9
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 5.6e-15 86.3 58 72.4
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 2.5e-07 60.8 40 82.5
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 8.1e-06 55.8 205 27.8


User provided reference genes

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