Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 1.2e-155 553.1 286 100.0
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 6.3e-128 461.1 288 79.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 3.0e-117 425.6 288 73.3
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.1e-116 423.7 288 75.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 3.3e-116 422.2 288 75.0
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.3e-116 421.8 288 75.3
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 5.6e-116 421.4 286 72.4
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 9.5e-116 420.6 286 72.0
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.6e-115 418.7 288 74.7
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 3.6e-115 418.7 286 73.8
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.4e-114 416.8 286 72.4
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 1.4e-114 416.8 288 73.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 6.8e-114 414.5 281 74.4
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.9e-114 414.1 281 74.7
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 5.8e-113 411.4 288 71.5
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 9.8e-113 410.6 286 71.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 1.3e-112 410.2 288 71.2
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 4.9e-112 408.3 282 72.7
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.1e-111 407.1 285 71.6
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.4e-111 406.8 286 71.0
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.4e-111 406.8 282 71.6
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 2.4e-111 406.0 287 71.1
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.4e-111 406.0 286 69.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.4e-111 406.0 281 73.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 5.4e-111 404.8 286 71.7
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 7.0e-111 404.4 287 69.7
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 9.2e-111 404.1 285 70.5
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.2e-110 403.7 290 70.7
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 2.7e-110 402.5 285 69.8
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.7e-110 402.5 281 72.2
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 6.0e-110 401.4 285 70.5
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 7.8e-110 401.0 288 69.4
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.0e-109 400.6 281 72.2
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.3e-109 400.2 288 69.8
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.7e-109 399.8 286 70.3
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.7e-109 399.8 286 70.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 3.9e-109 398.7 285 71.2
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.9e-108 396.4 288 71.5
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.3e-108 395.2 287 71.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.6e-108 394.8 297 70.0
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.2e-107 393.7 289 70.6
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.8e-107 392.5 289 70.6
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.1e-106 390.6 284 70.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 1.8e-106 389.8 290 69.0
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 2.3e-106 389.4 282 69.1
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 4.0e-106 388.7 279 71.0
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 6.8e-106 387.9 279 70.6
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 6.8e-106 387.9 291 69.8
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 8.9e-106 387.5 289 68.2
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 2.0e-105 386.3 279 70.6
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 5.8e-105 384.8 280 70.0
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 7.5e-105 384.4 289 67.5
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.3e-104 383.6 259 73.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.7e-104 383.3 289 67.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.9e-104 381.7 289 68.5
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 6.4e-104 381.3 281 68.7
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.2e-103 379.0 282 67.0
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.4e-103 378.3 299 67.6
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 5.4e-103 378.3 285 68.8
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 9.2e-103 377.5 286 68.5
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.7e-102 375.9 244 76.2
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.6e-102 375.2 295 67.1
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 1.1e-100 370.5 323 61.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.1e-100 370.5 286 66.8
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.5e-100 370.2 281 68.3
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.5e-100 369.4 269 70.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 3.3e-100 369.0 230 79.6
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 2.1e-99 366.3 293 64.8
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.8e-99 365.9 283 67.8
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.8e-99 365.9 283 67.8
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.8e-99 365.9 283 67.8
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 2.8e-99 365.9 269 69.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 2.8e-99 365.9 229 77.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 4.7e-99 365.2 276 68.5
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 6.2e-99 364.8 283 68.2
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 8.1e-99 364.4 283 67.1
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 8.1e-99 364.4 230 78.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.4e-98 363.6 277 68.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.0e-98 362.1 299 64.5
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 6.8e-98 361.3 280 65.7
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 8.9e-98 360.9 276 67.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 2.0e-97 359.8 276 67.4
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 5.8e-97 358.2 276 68.5
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 5.8e-97 358.2 276 68.5
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 5.8e-97 358.2 276 68.5
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 9.9e-97 357.5 237 73.8
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.3e-96 357.1 290 62.1
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.3e-96 357.1 283 66.8
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 2.9e-96 355.9 283 67.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-95 354.0 283 67.1
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-95 353.6 279 67.0
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.9e-95 353.2 293 63.1
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.9e-95 353.2 282 65.6
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.4e-95 352.8 283 63.6
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 7.1e-95 351.3 291 62.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 9.2e-95 350.9 283 66.1
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 9.2e-95 350.9 290 61.7
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 245 73.1
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 3.5e-94 349.0 216 79.6
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.0e-93 347.4 285 63.9
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.0e-93 345.9 295 63.1
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.0e-93 345.9 290 63.8
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 5.1e-93 345.1 289 63.3
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 7.3e-92 341.3 285 61.8
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 9.6e-92 340.9 255 67.5
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 9.6e-92 340.9 275 64.4
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.9e-87 326.6 254 65.7
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 5.4e-87 325.1 252 67.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 5.4e-87 325.1 282 61.0
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.0e-85 319.3 288 59.7
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 1.5e-84 317.0 218 73.4
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.6e-83 313.5 230 68.3
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.1e-82 310.8 295 57.6
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.4e-82 310.5 242 64.9
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 3.4e-81 305.8 229 68.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-80 303.9 229 68.1
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 9.3e-79 297.7 245 61.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.8e-74 283.5 227 61.7
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.4e-71 273.9 237 58.2
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.3e-69 267.3 292 48.3
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.8e-67 259.6 289 47.1
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 2.4e-66 256.5 263 52.5
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.9e-62 241.5 210 62.9
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.3e-58 228.8 197 53.8
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.5e-57 227.3 262 53.1
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.5e-57 225.7 153 69.9
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.5e-57 225.7 197 53.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.9e-57 225.3 197 52.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.3e-56 224.2 197 52.8
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.8e-56 222.6 139 74.8
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.1e-53 212.2 212 57.1
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.7e-52 208.0 225 53.8
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.4e-50 204.1 263 48.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.1e-50 202.6 138 70.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 9.4e-47 191.4 197 47.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.3e-43 181.0 166 60.2
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-34 149.4 186 44.1
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.0e-32 144.8 119 67.2
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 3.3e-28 129.8 83 77.1
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.3e-28 129.8 182 39.6
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.7e-28 129.0 192 41.7
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.7e-27 127.5 199 37.7
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 4.8e-27 125.9 77 79.2
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.0e-26 122.1 192 45.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.1e-26 121.7 209 42.1
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 6.5e-24 115.5 99 60.6
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 6.5e-24 115.5 99 60.6
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 4.7e-22 109.4 217 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.8e-19 99.4 59 79.7
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 60 75.0
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 4.5e-17 92.8 91 49.5
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 7.7e-17 92.0 56 76.8
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 60 73.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.8e-14 83.6 64 67.2
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 8.8e-13 78.6 56 69.6
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 4.1e-10 69.7 51 60.8
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.3e-07 60.1 92 40.2


User provided reference genes

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