Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.1e-181 639.8 326 100.0
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 3.9e-57 226.1 228 54.8
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 2.5e-56 223.4 208 60.1
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 1.6e-55 220.7 186 63.4
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 5.3e-54 215.7 211 55.9
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 9.0e-54 214.9 216 56.5
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 1.5e-53 214.2 209 56.0
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 2.6e-53 213.4 209 56.0
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 1.1e-51 208.0 220 53.2
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 3.2e-51 206.5 220 52.7
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 7.1e-51 205.3 186 59.1
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 9.3e-51 204.9 180 59.4
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 3.5e-50 203.0 211 55.0
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 4.6e-50 202.6 180 58.9
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 1.0e-49 201.4 211 54.0
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 2.3e-49 200.3 179 60.3
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 2.3e-49 200.3 180 57.8
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 6.7e-49 198.7 209 52.6
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 8.7e-49 198.4 220 53.2
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.1e-48 198.0 183 56.8
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.1e-48 198.0 216 51.4
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 1.1e-48 198.0 215 52.6
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 1.5e-48 197.6 223 53.8
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 5.7e-48 195.7 216 55.1
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.3e-47 194.5 219 51.6
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.6e-47 194.1 212 51.4
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 2.2e-47 193.7 179 57.0
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 4.8e-47 192.6 211 51.7
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 4.8e-47 192.6 213 50.2
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 1.4e-46 191.0 189 54.5
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.8e-46 190.7 216 51.4
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 2.4e-46 190.3 226 50.4
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 2.6e-45 186.8 212 51.4
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 5.9e-45 185.7 179 54.7
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 1.0e-44 184.9 210 48.6
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 1.0e-44 184.9 217 50.2
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 1.7e-44 184.1 221 49.3
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 3.8e-44 183.0 215 49.3
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 5.0e-44 182.6 229 48.5
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 6.5e-44 182.2 219 47.9
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 6.5e-44 182.2 216 49.1
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 1.4e-43 181.0 219 48.4
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 2.5e-43 180.3 209 52.2
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 2.5e-43 180.3 238 46.6
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 3.2e-43 179.9 179 55.3
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 5.5e-43 179.1 229 47.6
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 9.4e-43 178.3 205 47.8
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 9.4e-43 178.3 209 49.8
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 2.1e-42 177.2 208 50.0
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 2.1e-42 177.2 178 55.1
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 3.6e-42 176.4 177 54.8
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 6.1e-42 175.6 176 54.5
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 6.1e-42 175.6 167 58.1
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 5.1e-41 172.6 178 52.8
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 6.7e-41 172.2 180 52.8
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 6.7e-41 172.2 180 52.8
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 8.8e-41 171.8 170 51.2
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.5e-40 171.0 178 52.2
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 1.9e-40 170.6 176 54.0
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 3.3e-40 169.9 194 52.1
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 4.3e-40 169.5 205 44.9
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 9.7e-40 168.3 176 51.7
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 2.8e-39 166.8 178 51.7
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 4.8e-39 166.0 211 48.3
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 8.2e-39 165.2 214 47.2
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 2.4e-38 163.7 229 46.7
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 2.4e-38 163.7 193 49.2
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 3.1e-38 163.3 219 46.1
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 3.1e-38 163.3 210 45.7
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 3.1e-38 163.3 182 50.0
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.5e-37 161.0 230 43.9
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.7e-36 157.5 175 51.4
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 2.2e-36 157.1 180 51.7
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 5.0e-36 156.0 174 52.9
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 5.0e-36 156.0 191 48.7
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 6.5e-36 155.6 222 45.0
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 2.1e-34 150.6 220 45.0
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 3.6e-34 149.8 141 58.9
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 6.1e-34 149.1 169 50.3
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 7.9e-34 148.7 136 57.4
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.8e-33 147.5 222 43.7
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 3.0e-33 146.7 221 41.6
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 3.0e-33 146.7 218 43.6
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 8.8e-33 145.2 194 46.4
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 1.1e-32 144.8 144 53.5
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 2.0e-32 144.1 285 37.2
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 1.3e-31 141.4 153 50.3
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 6.3e-31 139.0 172 47.7
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 8.2e-31 138.7 137 53.3
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 8.2e-31 138.7 179 45.3
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 2.0e-29 134.0 142 50.0
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 4.5e-29 132.9 190 44.2
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 7.7e-29 132.1 172 44.8
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 3.8e-28 129.8 173 45.7
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 4.2e-27 126.3 210 39.0
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 5.5e-27 125.9 213 39.0
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 6.1e-26 122.5 143 46.9
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 1.4e-25 121.3 148 43.9
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.4e-22 111.3 153 41.8
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 7.7e-21 105.5 206 39.8
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 1.0e-20 105.1 170 37.1
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 6.5e-20 102.4 151 43.7
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 1.8e-17 94.4 105 50.5
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 2.9e-12 77.0 99 39.4
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 1.8e-09 67.8 71 52.1
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 1.8e-09 67.8 71 52.1
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.0e-08 64.3 72 48.6
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 7.5e-08 62.4 159 32.7
CDE10G0656 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 4.8e-07 59.7 106 34.0
SEGI_38065 Sequoiadendron giganteum HOM05D007009 ORTHO05D008451 4.8e-07 59.7 125 30.4
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 9.1e-06 55.5 83 39.8


User provided reference genes

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