Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 8.5e-123 443.7 233 100.0
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 2.3e-88 329.3 232 73.3
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 4.4e-87 325.1 231 73.2
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 4.9e-86 321.6 230 73.0
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.4e-85 319.3 228 74.6
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 4.6e-84 315.1 229 72.1
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 1.7e-83 313.2 229 71.6
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 8.6e-83 310.8 229 70.7
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 7.3e-82 307.8 228 70.6
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 9.5e-82 307.4 229 71.2
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.6e-81 305.4 230 68.7
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.4e-80 303.5 229 71.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.8e-80 303.1 229 69.4
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 2.3e-80 302.8 230 70.4
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.1e-80 302.4 230 68.3
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.8e-80 301.2 229 70.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 8.9e-80 300.8 229 70.3
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.0e-79 299.7 229 70.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 4.4e-79 298.5 229 71.2
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 9.9e-79 297.4 229 68.1
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 9.9e-79 297.4 229 68.1
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 2.9e-78 295.8 229 70.3
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.9e-78 295.8 230 70.4
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 2.9e-78 295.8 228 71.1
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.8e-78 295.4 229 69.9
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.4e-77 293.5 228 67.1
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.9e-77 293.1 229 67.2
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.4e-77 291.6 228 67.5
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 9.2e-77 290.8 230 69.6
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.2e-76 290.4 229 69.4
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.7e-76 289.3 228 66.7
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-76 289.3 229 68.6
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 3.5e-76 288.9 230 67.8
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.5e-76 288.9 229 69.0
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.0e-75 287.3 227 69.2
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.3e-75 287.0 233 67.8
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.7e-75 286.6 233 65.7
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.3e-74 282.0 230 67.0
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 4.3e-74 282.0 233 64.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 9.6e-74 280.8 233 65.2
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.6e-73 280.0 228 64.9
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 2.8e-73 279.3 230 65.7
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 3.6e-73 278.9 233 64.8
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.6e-73 278.9 230 65.2
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 4.7e-73 278.5 229 65.1
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 4.7e-73 278.5 278 58.6
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 6.2e-73 278.1 233 64.4
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 8.1e-73 277.7 229 66.8
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.1e-72 277.3 207 70.5
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.1e-72 277.3 230 65.2
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.4e-72 276.9 226 65.9
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 1.4e-72 276.9 183 76.0
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.8e-72 276.6 229 65.1
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.8e-72 276.6 230 64.3
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.0e-72 275.4 230 63.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 4.0e-72 275.4 230 63.5
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.2e-72 275.0 256 59.4
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.2e-72 275.0 220 69.1
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 5.2e-72 275.0 230 63.5
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 8.9e-72 274.2 233 63.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.5e-71 273.5 229 63.3
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.5e-71 273.5 228 64.9
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.0e-71 273.1 233 64.4
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.4e-71 272.3 227 66.5
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.4e-71 272.3 230 66.5
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 4.4e-71 271.9 226 67.3
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.8e-71 271.6 226 64.6
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 7.6e-71 271.2 228 64.5
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 9.9e-71 270.8 231 63.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 9.9e-71 270.8 226 63.3
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.3e-70 270.4 197 73.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 2.9e-70 269.2 230 66.1
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 3.8e-70 268.9 221 67.4
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.1e-69 267.3 226 64.6
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 1.9e-69 266.5 229 61.6
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-69 266.5 230 65.2
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 2.4e-69 266.2 197 69.0
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 3.2e-69 265.8 230 65.7
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 9.3e-69 264.2 230 65.2
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 9.3e-69 264.2 229 64.2
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.2e-68 263.8 230 65.2
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.6e-68 263.5 230 64.8
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.6e-68 263.5 231 61.0
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.1e-68 263.1 239 62.3
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 6.0e-68 261.5 233 63.9
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 6.0e-68 261.5 230 60.4
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 7.8e-68 261.2 232 62.9
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 1.0e-67 260.8 230 64.8
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 1.7e-67 260.0 200 69.0
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.3e-67 259.6 202 68.8
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 3.9e-67 258.8 224 61.6
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 8.7e-67 257.7 229 62.4
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.1e-66 257.3 231 63.2
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.1e-66 257.3 180 75.0
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.5e-66 256.9 175 76.6
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.5e-66 256.9 234 62.0
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-65 253.1 176 73.9
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.8e-64 250.0 229 59.0
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.4e-64 249.6 249 57.8
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 5.3e-64 248.4 262 56.1
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.5e-63 246.9 231 62.3
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 2.0e-63 246.5 185 71.4
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 4.5e-63 245.4 204 66.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 5.8e-63 245.0 230 57.0
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 9.9e-63 244.2 229 59.0
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 9.9e-63 244.2 229 59.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.2e-62 243.0 220 59.1
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 4.9e-62 241.9 232 58.6
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 6.4e-62 241.5 232 59.1
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 6.4e-62 241.5 237 59.1
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.4e-61 240.4 232 60.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 9.3e-61 237.7 173 70.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.3e-59 233.0 176 71.6
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 6.7e-59 231.5 179 70.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.5e-58 230.3 231 56.3
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.3e-57 227.3 233 55.4
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.1e-56 222.6 229 54.6
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 3.1e-56 222.6 229 54.6
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.9e-56 221.5 224 56.7
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.4e-55 219.2 158 70.9
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 6.4e-54 214.9 232 55.6
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 8.4e-54 214.5 231 55.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 2.4e-53 213.0 220 58.2
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 3.2e-53 212.6 215 57.7
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 6.0e-52 208.4 245 52.7
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 3.0e-51 206.1 253 50.6
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.5e-50 203.8 232 53.9
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 7.4e-50 201.4 153 67.3
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-49 200.3 203 57.6
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 2.1e-49 199.9 229 52.8
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.8e-48 196.8 228 50.0
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 2.4e-48 196.4 200 56.5
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 2.6e-47 193.0 134 71.6
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 3.8e-46 189.1 228 49.1
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 3.9e-43 179.1 234 47.4
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.9e-43 179.1 172 60.5
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 7.4e-42 174.9 128 68.8
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.4e-40 170.6 173 56.6
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.1e-37 161.0 109 76.1
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 3.2e-37 159.5 99 80.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 7.4e-34 148.3 152 58.6
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.3e-33 147.5 163 58.3
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.8e-33 145.6 153 56.2
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.2e-33 144.8 163 52.8
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.4e-32 143.3 133 59.4
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.9e-29 133.7 174 46.0
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 2.7e-28 129.8 123 60.2
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.0e-27 127.9 98 60.2
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 5.7e-26 122.1 76 77.6
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-22 110.9 71 80.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 1.1e-18 97.8 64 81.2
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-18 97.8 95 60.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.1e-18 97.8 95 60.0
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.5e-18 97.4 68 64.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 2.5e-13 80.1 134 35.1
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 5.5e-13 79.0 103 42.7
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.4e-11 74.3 105 41.0
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 4.5e-07 59.3 65 50.8


User provided reference genes

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