Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 1.3e-91 340.1 198 100.0
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 4.3e-31 139.0 148 56.1
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 1.7e-27 127.1 154 58.4
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.2e-27 126.7 149 50.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 8.4e-27 124.8 158 47.5
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 1.1e-26 124.4 148 60.8
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 7.1e-26 121.7 144 66.0
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.1e-23 114.4 154 57.8
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 5.7e-23 112.1 165 43.6
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 1.3e-22 110.9 153 43.8
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 1.3e-22 110.9 143 49.7
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 2.1e-22 110.2 153 50.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.7e-22 109.4 164 43.9
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.4e-21 107.5 150 49.3
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 1.8e-21 107.1 162 45.1
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 3.1e-21 106.3 162 49.4
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 3.1e-21 106.3 158 57.0
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.1e-21 105.9 172 45.9
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 4.1e-21 105.9 162 48.8
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 4.1e-21 105.9 162 49.4
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 4.1e-21 105.9 162 48.8
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 4.1e-21 105.9 162 48.8
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 4.1e-21 105.9 157 49.0
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 6.9e-21 105.1 160 50.6
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.9e-21 105.1 165 39.4
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.2e-20 104.4 149 43.6
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 1.5e-20 104.0 158 42.4
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.5e-20 104.0 141 58.9
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.0e-20 103.6 164 51.8
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.6e-20 103.2 94 59.6
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.6e-20 103.2 163 47.2
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 3.4e-20 102.8 171 41.5
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 7.6e-20 101.7 151 43.0
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 7.6e-20 101.7 165 38.8
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.0e-19 101.3 143 44.1
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.3e-19 100.9 139 53.2
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.3e-19 100.9 101 55.4
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.3e-19 100.9 177 47.5
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 1.7e-19 100.5 171 48.0
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 1.7e-19 100.5 171 48.0
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.9e-19 99.8 143 43.4
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 2.9e-19 99.8 150 44.7
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.9e-19 99.8 88 58.0
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.9e-19 99.8 88 58.0
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 5.0e-19 99.0 165 38.2
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 5.0e-19 99.0 170 41.2
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 6.5e-19 98.6 106 55.7
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 6.5e-19 98.6 154 51.3
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 8.5e-19 98.2 143 43.4
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 1.1e-18 97.8 142 45.1
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 1.1e-18 97.8 143 44.8
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-18 97.4 142 58.5
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.5e-18 96.7 162 45.1
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 3.2e-18 96.3 154 43.5
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 5.5e-18 95.5 153 45.8
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 7.2e-18 95.1 94 56.4
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.6e-17 94.0 188 42.6
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.1e-17 93.6 172 40.7
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.1e-17 93.6 106 50.9
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.1e-17 93.6 157 51.0
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 6.1e-17 92.0 141 43.3
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 7.9e-17 91.7 71 60.6
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 7.9e-17 91.7 146 43.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 1.8e-16 90.5 66 66.7
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 2.3e-16 90.1 158 55.7
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.9e-16 89.4 160 45.6
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.1e-16 89.0 144 43.1
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 8.7e-16 88.2 169 43.8
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-15 87.8 137 40.1
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.1e-15 87.8 158 46.8
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.1e-15 87.8 106 49.1
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.1e-15 87.8 162 41.4
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.5e-15 86.7 158 48.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 3.3e-15 86.3 162 45.7
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 4.3e-15 85.9 132 53.0
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 4.3e-15 85.9 74 58.1
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 5.7e-15 85.5 79 59.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 7.4e-15 85.1 158 44.9
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 7.4e-15 85.1 96 53.1
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 7.4e-15 85.1 91 49.5
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.3e-14 84.3 97 51.5
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.3e-14 84.3 158 50.0
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.3e-14 84.3 159 45.3
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.2e-14 83.6 82 53.7
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 2.8e-14 83.2 162 40.1
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 3.7e-14 82.8 159 37.7
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 4.8e-14 82.4 95 52.6
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.8e-14 82.4 158 39.9
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 4.8e-14 82.4 81 53.1
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 4.8e-14 82.4 161 39.1
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 6.3e-14 82.0 92 55.4
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 6.3e-14 82.0 76 57.9
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.2e-14 81.6 73 64.4
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.2e-14 81.6 92 52.2
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 8.2e-14 81.6 167 48.5
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 8.2e-14 81.6 101 48.5
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.4e-13 80.9 144 37.5
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.8e-13 80.5 172 36.6
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.4e-13 80.1 95 50.5
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 2.4e-13 80.1 135 54.8
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.4e-13 80.1 73 53.4
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.4e-13 80.1 70 57.1
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.4e-13 80.1 146 43.2
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 2.4e-13 80.1 144 38.2
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 3.1e-13 79.7 94 46.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 5.3e-13 79.0 118 43.2
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 6.9e-13 78.6 82 52.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 9.0e-13 78.2 144 41.0
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 9.0e-13 78.2 78 50.0
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 9.0e-13 78.2 159 45.9
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 9.0e-13 78.2 71 54.9
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-12 77.8 136 37.5
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 1.5e-12 77.4 150 38.7
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.0e-12 77.0 95 44.2
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.6e-12 76.6 146 39.0
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 2.6e-12 76.6 149 55.0
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 4.5e-12 75.9 143 46.9
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 5.9e-12 75.5 140 36.4
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 7.7e-12 75.1 103 45.6
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 7.7e-12 75.1 80 51.2
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.0e-11 74.7 97 42.3
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.0e-11 74.7 102 43.1
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.0e-11 74.7 136 36.8
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.3e-11 74.3 79 54.4
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.3e-11 74.3 79 54.4
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-11 74.3 142 39.4
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-11 74.3 142 39.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.3e-11 74.3 79 49.4
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 1.7e-11 73.9 86 53.5
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 2.2e-11 73.6 87 44.8
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 2.9e-11 73.2 90 50.0
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 2.9e-11 73.2 138 35.5
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 2.9e-11 73.2 145 40.0
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 5.0e-11 72.4 75 52.0
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 6.5e-11 72.0 135 40.7
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 8.5e-11 71.6 81 51.9
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 8.5e-11 71.6 139 53.2
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 1.4e-10 70.9 126 44.4
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.4e-10 70.9 81 53.1
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.4e-10 70.9 144 35.4
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 1.4e-10 70.9 63 57.1
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 1.9e-10 70.5 94 43.6
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.9e-10 70.5 67 53.7
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 2.5e-10 70.1 98 40.8
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.5e-10 70.1 141 36.2
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 2.5e-10 70.1 78 50.0
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 3.2e-10 69.7 68 52.9
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 4.2e-10 69.3 146 40.4
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 5.5e-10 68.9 142 40.8
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.2e-10 68.6 148 36.5
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 1.2e-09 67.8 76 46.1
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-09 67.4 87 44.8
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 1.6e-09 67.4 149 34.2
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 1.6e-09 67.4 149 34.2
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.6e-09 67.4 106 41.5
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 2.1e-09 67.0 133 48.1
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 2.1e-09 67.0 104 42.3
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 3.6e-09 66.2 94 42.6
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 3.6e-09 66.2 82 48.8
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 4.6e-09 65.9 157 35.7
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 6.1e-09 65.5 77 50.6
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 7.9e-09 65.1 94 40.4
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 1.4e-08 64.3 82 46.3
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 1.8e-08 63.9 146 50.7
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-08 63.9 99 44.4
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 3.0e-08 63.2 155 38.7
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 3.0e-08 63.2 143 35.0
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 3.9e-08 62.8 141 36.9
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 5.1e-08 62.4 76 44.7
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.5e-07 60.8 85 44.7
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.5e-07 60.8 74 47.3
ATR0579G128 Amborella trichopoda HOM05D003853 ORTHO05D004171 2.0e-07 60.5 64 45.3
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 2.6e-07 60.1 71 49.3
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 5.7e-07 58.9 164 36.0
Pp3c22_17930 Physcomitrium patens HOM05D030757 ORTHO05D004171 2.8e-06 56.6 79 39.2
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 4.8e-06 55.8 72 48.6
Pp3c24_11300 Physcomitrium patens HOM05D030757 ORTHO05D004171 6.3e-06 55.5 126 34.9


User provided reference genes

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