Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.7e-154 549.3 267 100.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.8e-100 369.8 256 68.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.5e-99 366.7 255 66.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 4.4e-99 365.2 255 66.7
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 4.9e-98 361.7 255 66.7
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.1e-97 358.6 256 63.7
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.2e-96 357.1 255 64.7
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.6e-96 356.7 255 65.5
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 2.1e-96 356.3 262 63.0
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.1e-96 356.3 254 63.8
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 3.5e-96 355.5 256 66.0
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 3.5e-96 355.5 254 65.4
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 4.6e-96 355.1 258 64.7
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 6.0e-96 354.8 277 62.5
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 6.0e-96 354.8 258 64.7
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 6.0e-96 354.8 255 64.7
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.3e-95 353.6 255 65.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.3e-95 352.8 264 62.5
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 3.9e-95 352.1 257 65.8
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 8.6e-95 350.9 255 64.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.1e-94 350.5 257 64.6
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.5e-94 349.4 229 67.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.5e-94 349.4 229 67.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.5e-94 349.4 254 63.8
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 4.3e-94 348.6 264 61.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.3e-94 348.6 264 61.7
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 9.5e-94 347.4 251 62.9
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.2e-93 347.1 256 65.2
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.6e-93 346.7 258 62.8
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.6e-93 346.7 258 64.0
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 8.1e-93 344.4 264 61.4
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.1e-92 344.0 240 65.8
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.8e-92 343.2 221 69.2
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.1e-92 342.4 258 62.0
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.0e-92 342.0 255 62.4
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 5.2e-92 341.7 254 62.2
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 6.8e-92 341.3 256 59.8
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.0e-91 339.7 258 64.0
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.6e-91 339.3 252 62.3
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 3.4e-91 339.0 252 61.5
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.4e-91 339.0 256 60.9
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 7.6e-91 337.8 256 62.1
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 9.9e-91 337.4 256 60.5
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.3e-90 337.0 256 62.1
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.7e-90 336.7 252 61.9
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.9e-90 335.1 256 60.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 8.4e-90 334.3 256 62.5
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 8.4e-90 334.3 252 61.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.4e-89 333.6 261 60.9
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 4.1e-89 332.0 258 58.1
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 5.4e-89 331.6 256 60.5
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 7.1e-89 331.3 253 60.5
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.2e-88 330.5 256 60.9
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.1e-88 329.7 256 61.7
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 3.9e-87 325.5 259 61.8
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.9e-86 323.2 257 59.9
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 9.6e-86 320.9 295 53.6
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 3.6e-85 318.9 200 71.5
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 1.1e-84 317.4 256 56.6
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.4e-84 316.2 228 61.4
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 3.1e-84 315.8 256 57.0
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.9e-84 314.3 269 55.4
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.5e-83 313.5 260 58.1
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.5e-83 313.5 257 61.1
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 3.4e-83 312.4 252 58.7
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 5.8e-83 311.6 259 58.7
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 7.6e-83 311.2 266 56.8
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 9.9e-83 310.8 256 58.6
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.3e-82 310.5 263 60.1
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 2.9e-82 309.3 257 57.2
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.9e-82 309.3 239 61.9
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 1.1e-81 307.4 257 57.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.9e-81 306.6 251 57.8
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 3.2e-81 305.8 287 53.3
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.2e-81 305.4 242 58.3
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 7.1e-81 304.7 235 58.7
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.2e-80 303.9 256 57.4
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 4.6e-80 302.0 259 56.8
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 8.7e-79 297.7 251 56.2
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-78 297.4 235 57.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 3.3e-78 295.8 228 62.3
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 9.6e-78 294.3 233 57.5
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.3e-77 293.9 222 56.8
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.6e-77 293.5 269 52.0
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 3.6e-77 292.4 298 50.3
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.6e-77 292.4 235 56.2
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 4.8e-77 292.0 253 56.9
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 6.2e-77 291.6 261 52.9
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.1e-76 290.8 257 56.0
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.4e-76 289.7 257 56.8
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 6.9e-76 288.1 233 55.8
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.5e-75 287.0 323 47.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.3e-74 283.9 276 50.0
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.9e-74 282.7 217 58.5
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.4e-73 280.4 215 58.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 9.3e-73 277.7 251 53.8
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 3.5e-72 275.8 260 53.1
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.6e-72 275.4 200 62.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 1.0e-71 274.2 220 59.1
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 5.6e-70 268.5 181 66.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.3e-69 267.3 229 55.9
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 7.6e-67 258.1 261 51.3
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.4e-66 254.6 185 62.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.4e-65 253.1 183 60.1
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 3.2e-65 252.7 222 54.1
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 5.5e-65 251.9 300 48.7
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 6.9e-60 235.0 224 53.6
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.8e-55 220.3 183 57.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 3.9e-55 219.2 169 62.1
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 2.5e-54 216.5 212 47.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 7.4e-54 214.9 254 44.1
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 5.3e-52 208.8 187 52.4
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 9.0e-52 208.0 173 54.3
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.0e-51 206.8 218 50.0
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.9e-51 205.3 141 64.5
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 1.7e-50 203.8 171 55.6
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 2.9e-50 203.0 191 50.3
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.9e-48 194.9 225 43.1
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.9e-48 194.9 131 63.4
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 5.1e-47 192.2 243 44.0
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 9.7e-46 188.0 141 63.1
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.3e-45 187.6 130 63.1
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.4e-44 184.1 164 56.1
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.0e-43 180.3 147 59.9
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.9e-39 166.0 149 55.0
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 2.5e-38 163.3 112 64.3
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 5.9e-35 152.1 216 40.3
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-33 147.9 128 56.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.2e-33 146.4 382 29.3
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.2e-32 144.4 195 40.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 2.1e-32 143.7 124 54.8
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 6.7e-31 138.7 149 49.0
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-30 137.9 88 67.0
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 4.4e-30 136.0 113 52.2
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.4e-30 135.2 88 65.9
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.7e-30 134.8 88 65.9
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.2e-29 133.7 88 64.8
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 4.8e-29 132.5 261 31.8
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-28 131.3 108 53.7
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 9.1e-28 128.3 94 62.8
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 3.8e-26 122.9 247 30.8
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.5e-26 121.7 236 33.5
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 2.0e-22 110.5 76 60.5
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 7.5e-22 108.6 69 71.0
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 9.7e-22 108.2 66 66.7
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.7e-21 107.5 72 65.3
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.8e-21 106.7 66 68.2
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.1e-20 102.8 66 63.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 9.1e-20 101.7 73 61.6
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 9.1e-20 101.7 74 59.5
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 4.4e-14 82.8 88 50.0
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.2e-13 80.5 79 50.6
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-13 80.1 83 54.2
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 7.0e-12 75.5 58 55.2
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 9.1e-12 75.1 81 48.1
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 7.7e-11 72.0 48 62.5
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 1.7e-10 70.9 43 72.1
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 9.4e-09 65.1 51 54.9
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.0e-07 60.1 34 67.6
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 3.0e-07 60.1 75 45.3
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 2.6e-06 57.0 152 27.6
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 4.4e-06 56.2 42 57.1


User provided reference genes

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