Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 4.8e-131 471.1 226 100.0
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.1e-119 433.3 225 89.3
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 4.2e-119 431.4 226 88.9
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.2e-118 429.9 225 88.4
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.6e-118 429.5 225 88.4
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 8.0e-118 427.2 225 88.4
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.0e-117 425.2 226 88.1
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.6e-116 422.2 224 87.1
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 7.5e-116 420.6 224 88.4
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.3e-115 419.9 225 87.1
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 2.8e-115 418.7 226 87.2
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 8.3e-115 417.2 225 85.3
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 8.3e-115 417.2 224 86.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.1e-114 416.8 229 86.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.1e-114 416.8 225 85.8
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.4e-114 416.4 225 85.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.8e-114 416.0 224 87.1
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.8e-114 416.0 226 85.8
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 1.8e-114 416.0 221 86.0
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.8e-114 416.0 221 86.0
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 3.2e-114 415.2 226 85.8
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.1e-114 414.8 225 85.3
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 5.4e-114 414.5 220 87.3
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 7.0e-114 414.1 226 85.4
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 9.2e-114 413.7 221 86.9
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-113 413.3 225 85.3
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.2e-113 413.3 225 84.9
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.2e-113 413.3 225 84.9
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.0e-113 412.5 221 86.0
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.7e-113 412.1 224 85.7
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 4.6e-113 411.4 224 88.4
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 4.6e-113 411.4 225 84.4
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 5.9e-113 411.0 222 85.6
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 5.9e-113 411.0 226 85.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 7.8e-113 410.6 221 87.3
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.0e-112 410.2 224 85.3
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.7e-112 409.5 225 85.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 86.4
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 2.3e-112 409.1 225 85.3
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 2.3e-112 409.1 226 83.2
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.9e-112 408.7 224 83.9
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.9e-112 408.7 224 84.4
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.0e-112 407.9 226 85.0
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 6.6e-112 407.5 224 84.4
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 6.6e-112 407.5 225 83.1
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 8.6e-112 407.1 221 86.0
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 8.6e-112 407.1 226 84.1
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.1e-111 406.8 225 83.1
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 85.7
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.5e-111 406.4 225 83.6
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 84.4
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 84.8
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-111 405.6 222 84.7
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.5e-111 405.6 225 83.1
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 2.5e-111 405.6 225 83.1
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 3.3e-111 405.2 222 84.2
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 4.3e-111 404.8 222 86.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 4.3e-111 404.8 225 83.6
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 4.3e-111 404.8 225 83.6
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 5.6e-111 404.4 221 84.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.2e-110 403.3 222 83.8
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.2e-110 403.3 224 84.4
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 1.2e-110 403.3 226 83.2
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 224 83.9
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 2.1e-110 402.5 224 83.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.8e-110 402.1 226 82.7
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.8e-110 402.1 222 83.8
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 3.6e-110 401.7 224 85.3
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 3.6e-110 401.7 220 84.1
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 3.6e-110 401.7 220 84.1
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 3.6e-110 401.7 220 84.1
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 3.6e-110 401.7 224 83.0
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 4.7e-110 401.4 226 82.3
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 83.8
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.4e-109 399.8 225 83.6
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.8e-109 399.4 221 83.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.8e-109 399.4 218 84.9
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.8e-109 399.4 239 80.3
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.8e-109 399.4 222 82.0
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 2.3e-109 399.1 225 81.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.3e-109 399.1 219 84.5
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 2.3e-109 399.1 222 82.4
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 4.0e-109 398.3 212 86.8
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 5.2e-109 397.9 226 81.9
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 5.2e-109 397.9 222 82.9
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.2e-109 397.9 224 82.6
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 6.8e-109 397.5 222 83.3
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 6.8e-109 397.5 222 83.3
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.2e-108 396.7 226 81.9
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.2e-108 396.7 226 83.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 84.8
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.0e-108 396.0 212 86.3
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.6e-108 395.6 225 81.8
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.6e-108 395.6 224 82.1
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 5.8e-108 394.4 224 80.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.8e-108 394.4 224 83.5
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.3e-107 393.3 225 82.2
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.7e-107 392.9 215 84.7
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 81.4
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 4.9e-107 391.3 226 81.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 6.4e-107 391.0 221 81.9
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 8.3e-107 390.6 224 79.5
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.1e-106 390.2 221 83.7
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.1e-106 390.2 245 75.5
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.1e-106 390.2 218 82.1
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.9e-106 389.4 222 80.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.4e-106 389.0 226 82.3
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 2.4e-106 389.0 224 79.5
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 4.1e-106 388.3 222 81.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 5.4e-106 387.9 251 74.5
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 7.0e-106 387.5 218 81.7
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.6e-105 386.3 224 81.2
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 8.6e-104 380.6 224 80.8
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.5e-103 379.0 279 68.8
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.3e-103 377.5 215 81.4
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 4.0e-101 371.7 205 84.9
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 8.9e-101 370.5 215 80.0
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.1e-95 353.6 219 71.7
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.7e-94 348.2 228 72.8
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.8e-92 341.3 221 70.6
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 3.7e-91 338.6 222 71.6
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 7.1e-90 334.3 217 68.2
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 9.6e-87 323.9 222 67.6
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.1e-82 310.5 164 90.9
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.3e-80 302.8 161 89.4
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 8.1e-78 294.3 169 78.1
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.2e-74 282.0 153 84.3
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.2e-73 280.4 160 78.1
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 8.7e-72 274.2 219 58.4
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-64 250.4 131 84.7
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.7e-64 248.1 163 72.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.3e-59 233.8 218 51.8
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 4.9e-59 231.9 209 55.0
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.4e-58 230.3 133 78.9
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 1.9e-55 219.9 213 49.3
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 3.7e-54 215.7 148 76.4
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 6.9e-53 211.5 111 90.1
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.1e-49 198.4 115 75.7
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 6.7e-48 194.9 113 76.1
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 4.1e-45 185.7 130 62.3
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.9e-40 169.1 86 84.9
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.1e-37 161.0 102 74.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.9e-35 152.9 218 37.2
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 2.7e-33 146.4 97 79.4
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.6e-28 130.6 75 84.0
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.0e-27 127.9 134 47.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 5.5e-26 122.1 66 83.3
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 7.2e-26 121.7 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 9.4e-26 121.3 83 65.1
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.0e-24 117.9 78 76.9
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 3.7e-22 109.4 61 90.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.8e-21 107.1 61 90.2
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 3.1e-21 106.3 54 88.9
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.0e-20 103.6 59 74.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.5e-20 102.4 64 79.7
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.1e-18 97.8 64 73.4
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 1.1e-18 97.8 65 76.9
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.1e-17 93.6 128 47.7
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 7.5e-15 85.1 54 81.5
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 7.5e-15 85.1 100 47.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 76.6 50 74.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-09 67.0 39 71.8
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 3.4e-07 59.7 43 72.1
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.4e-07 59.3 35 80.0


User provided reference genes

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