Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 7.2e-166 587.4 352 100.0
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.8e-60 237.3 345 56.8
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 4.2e-57 226.1 343 57.1
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 9.4e-57 224.9 344 56.1
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 2.7e-56 223.4 346 56.4
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.0e-56 221.9 345 54.2
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.0e-56 221.9 345 54.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.3e-55 220.3 345 53.9
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.0e-55 219.9 343 53.6
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.3e-54 216.5 344 46.2
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 8.2e-53 211.8 343 52.8
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 1.6e-51 207.6 334 54.2
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 4.5e-51 206.1 331 54.7
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 7.7e-51 205.3 325 56.3
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 1.3e-50 204.5 344 51.7
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 8.5e-50 201.8 344 48.8
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 2.5e-49 200.3 359 51.5
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 7.2e-49 198.7 356 53.7
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 1.6e-48 197.6 344 51.5
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 2.1e-48 197.2 344 51.2
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.8e-47 194.1 330 54.2
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.0e-47 193.4 331 53.8
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 5.2e-47 192.6 346 48.3
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 1.2e-46 191.4 344 50.9
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 2.0e-46 190.7 334 49.4
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 2.8e-45 186.8 333 48.6
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.7e-45 186.4 333 49.5
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.8e-44 184.1 346 52.9
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 2.4e-44 183.7 342 49.4
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.0e-43 180.6 333 50.8
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 2.0e-43 180.6 333 50.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 2.0e-43 180.6 333 51.4
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.7e-43 180.3 350 43.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 2.5e-41 173.7 348 49.1
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 4.2e-41 172.9 335 48.7
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 9.5e-41 171.8 339 49.9
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.2e-40 171.4 353 49.0
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.2e-40 171.4 246 49.2
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 2.1e-40 170.6 325 50.5
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 4.7e-40 169.5 346 49.7
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 6.1e-40 169.1 333 49.2
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.0e-39 168.3 345 47.2
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.0e-39 168.3 339 48.1
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.0e-39 168.3 336 50.3
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.8e-39 167.5 345 47.2
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 2.3e-39 167.2 351 47.3
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 4.0e-39 166.4 339 43.1
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 6.8e-39 165.6 352 48.9
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 6.8e-39 165.6 352 48.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 8.8e-39 165.2 347 49.6
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.5e-38 164.5 352 48.3
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 4.4e-38 162.9 350 47.7
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 7.5e-38 162.2 348 42.5
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 9.8e-38 161.8 276 43.8
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.3e-37 161.4 352 48.6
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 4.9e-37 159.5 336 51.5
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.8e-36 157.5 344 50.6
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.2e-36 155.2 347 39.5
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.2e-35 154.8 350 48.0
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 1.6e-35 154.5 336 37.5
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 7.7e-35 152.1 292 39.4
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 1.0e-34 151.8 356 46.6
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.7e-34 151.0 335 43.0
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 2.9e-34 150.2 344 47.7
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.8e-34 149.8 332 46.7
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 6.6e-34 149.1 337 48.1
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 1.9e-33 147.5 341 37.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 2.5e-33 147.1 326 45.7
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 2.5e-33 147.1 346 38.4
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.5e-33 147.1 341 39.9
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.3e-33 146.7 340 45.9
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.7e-32 142.9 323 47.4
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 4.7e-32 142.9 327 39.1
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 8.0e-32 142.1 335 43.0
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.0e-31 141.7 324 46.6
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 1.4e-31 141.4 357 44.8
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-31 141.4 345 42.6
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-31 141.4 345 42.6
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.4e-31 141.4 345 42.6
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-31 141.0 324 46.0
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.3e-31 140.6 315 43.2
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 2.3e-31 140.6 365 44.7
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 5.2e-31 139.4 351 37.9
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 5.2e-31 139.4 218 58.7
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 9.8e-30 135.2 352 45.2
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 9.8e-30 135.2 338 45.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 9.8e-30 135.2 338 45.0
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.3e-29 134.8 351 36.8
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 3.7e-29 133.3 357 36.1
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.9e-29 132.9 325 44.9
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.4e-28 131.3 359 36.2
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.8e-28 131.0 358 35.8
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.4e-28 130.6 343 38.2
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 3.2e-28 130.2 342 39.8
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-27 128.3 238 55.5
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 2.0e-27 127.5 339 40.4
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 2.7e-27 127.1 362 36.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 7.8e-27 125.6 342 40.1
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.8e-27 125.6 345 35.4
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 1.0e-26 125.2 342 39.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 2.3e-26 124.0 349 40.4
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 3.9e-26 123.2 341 36.7
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 5.0e-26 122.9 342 39.8
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 5.0e-26 122.9 342 39.8
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 8.6e-26 122.1 342 38.9
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 1.1e-25 121.7 332 39.2
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 1.1e-25 121.7 340 38.5
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.5e-25 121.3 344 37.2
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 1.6e-24 117.9 320 42.8
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 4.7e-24 116.3 179 47.5
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 1.8e-23 114.4 328 42.7
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.8e-23 114.4 343 38.2
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.3e-23 114.0 346 35.3
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 4.0e-23 113.2 345 38.3
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 4.0e-23 113.2 341 42.5
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 5.2e-23 112.8 351 35.3
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 6.8e-23 112.5 341 34.6
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 8.9e-23 112.1 343 37.9
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 2.6e-22 110.5 351 38.7
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 4.4e-22 109.8 347 38.0
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 4.4e-22 109.8 332 39.2
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.5e-22 109.0 252 48.0
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 7.5e-22 109.0 335 38.2
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 4.9e-21 106.3 346 37.6
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 8.3e-21 105.5 344 32.6
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.9e-20 104.4 333 37.8
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 7.0e-20 102.4 343 36.4
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 1.6e-19 101.3 326 38.0
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 1.6e-19 101.3 340 38.2
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 3.5e-19 100.1 330 31.8
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 6.0e-19 99.4 362 35.1
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.0e-18 98.6 333 41.4
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.9e-18 96.7 338 36.4
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.6e-16 91.3 348 33.9
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.8e-16 90.5 318 39.3
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 2.8e-16 90.5 320 32.2
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 1.1e-15 88.6 345 38.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 6.8e-15 85.9 328 32.6
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 8.9e-15 85.5 267 43.1
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.5e-14 84.7 340 40.9
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 2.6e-14 84.0 388 37.4
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 9.2e-12 75.5 333 31.5
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 9.2e-12 75.5 362 34.3
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 4.6e-11 73.2 340 35.6
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 2.8e-08 63.9 274 30.3
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 4.7e-08 63.2 276 30.1
CDE02G4104 Ceratophyllum demersum HOM05D004533 ORTHO05D005347 8.1e-08 62.4 327 27.5
GSVIVG01012248001 Vitis vinifera HOM05D004533 ORTHO05D005347 8.9e-07 58.9 69 46.4
TAR381G0317 Trochodendron aralioides HOM05D004533 ORTHO05D005347 7.6e-06 55.8 120 40.8


User provided reference genes

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