Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.6e-73 279.3 133 100.0
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.4e-29 133.3 85 72.9
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.2e-27 125.9 85 64.7
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 5.0e-27 124.8 92 62.0
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 5.5e-26 121.3 89 60.7
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.4e-26 120.6 88 61.4
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 2.1e-25 119.4 88 61.4
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 2.1e-25 119.4 87 60.9
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 6.1e-25 117.9 105 52.4
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 6.1e-25 117.9 105 52.4
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.0e-24 117.1 92 60.9
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.8e-24 116.3 106 53.8
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.8e-24 116.3 89 55.1
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.3e-24 115.9 82 62.2
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 3.0e-24 115.5 103 53.4
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 5.2e-24 114.8 89 57.3
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 5.2e-24 114.8 89 57.3
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 5.2e-24 114.8 106 53.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 6.8e-24 114.4 76 67.1
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 8.8e-24 114.0 106 52.8
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 8.8e-24 114.0 89 61.8
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 1.5e-23 113.2 73 67.1
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 2.0e-23 112.8 78 67.9
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.0e-23 112.8 77 61.0
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 2.6e-23 112.5 91 58.2
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 2.6e-23 112.5 90 62.2
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 2.6e-23 112.5 102 54.9
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 2.6e-23 112.5 90 62.2
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 4.4e-23 111.7 76 60.5
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 4.4e-23 111.7 80 61.2
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 4.4e-23 111.7 93 57.0
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 5.7e-23 111.3 85 58.8
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 7.5e-23 110.9 88 56.8
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.5e-23 110.9 97 56.7
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 9.8e-23 110.5 87 60.9
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 9.8e-23 110.5 78 62.8
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.3e-22 110.2 80 66.2
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.3e-22 110.2 86 64.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 1.7e-22 109.8 84 63.1
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.2e-22 109.4 88 56.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.2e-22 109.4 93 58.1
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.2e-22 109.4 71 69.0
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.8e-22 109.0 106 48.1
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.8e-22 109.0 78 60.3
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 4.8e-22 108.2 83 59.0
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 4.8e-22 108.2 81 63.0
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 4.8e-22 108.2 84 60.7
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.8e-21 106.3 72 69.4
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.1e-21 105.5 91 57.1
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 4.1e-21 105.1 82 57.3
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.1e-21 105.1 82 58.5
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 7.0e-21 104.4 82 58.5
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 7.0e-21 104.4 71 67.6
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 7.0e-21 104.4 91 53.8
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-20 103.6 97 53.6
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.6e-20 103.2 118 50.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.6e-20 103.2 68 70.6
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.7e-20 102.4 79 65.8
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.7e-20 102.4 85 56.5
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 3.5e-20 102.1 83 57.8
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 4.5e-20 101.7 84 57.1
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.9e-20 101.3 78 61.5
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-19 100.5 98 53.1
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.0e-19 100.5 98 53.1
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.3e-19 100.1 77 59.7
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.3e-19 100.1 79 64.6
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 1.3e-19 100.1 90 48.9
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-19 99.8 85 57.6
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.9e-19 99.0 90 51.1
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 2.9e-19 99.0 68 66.2
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 5.0e-19 98.2 76 61.8
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 5.0e-19 98.2 88 51.1
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 6.6e-19 97.8 75 61.3
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.6e-19 97.8 77 61.0
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.1e-18 97.1 84 53.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.1e-18 97.1 97 52.6
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 1.5e-18 96.7 84 54.8
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.9e-18 96.3 74 55.4
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.5e-18 95.9 84 54.8
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.5e-18 95.9 79 59.5
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.5e-18 95.9 84 53.6
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.5e-18 95.9 86 53.5
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.3e-18 95.5 109 45.0
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 4.2e-18 95.1 80 55.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 4.2e-18 95.1 96 52.1
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 4.2e-18 95.1 76 57.9
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 4.2e-18 95.1 77 58.4
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.5e-18 94.7 104 44.2
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.5e-18 94.7 92 47.8
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 5.5e-18 94.7 78 53.8
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 7.2e-18 94.4 89 51.7
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 9.5e-18 94.0 103 46.6
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 9.5e-18 94.0 91 51.6
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-17 93.6 104 44.2
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.6e-17 93.2 69 62.3
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.1e-17 92.8 75 57.3
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 2.8e-17 92.4 98 49.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 2.8e-17 92.4 99 47.5
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 3.6e-17 92.0 69 62.3
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 3.6e-17 92.0 92 51.1
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 4.7e-17 91.7 70 58.6
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.7e-17 91.7 92 48.9
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 4.7e-17 91.7 111 45.9
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.0e-16 90.5 106 44.3
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.4e-16 90.1 92 51.1
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.3e-16 89.4 67 64.2
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.3e-16 89.4 75 57.3
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 6.8e-16 87.8 88 47.7
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 6.8e-16 87.8 68 58.8
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 1.5e-15 86.7 84 47.6
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.5e-15 86.7 84 50.0
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.0e-15 86.3 82 48.8
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.0e-15 86.3 68 55.9
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 7.5e-15 84.3 76 52.6
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 8.3e-14 80.9 68 54.4
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 8.3e-14 80.9 66 60.6
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 8.3e-14 80.9 68 54.4
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 8.3e-14 80.9 54 70.4
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.4e-13 80.1 62 62.9
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 5.4e-13 78.2 79 46.8
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 5.9e-12 74.7 75 54.7
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.3e-11 73.6 68 57.4
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 1.1e-10 70.5 48 66.7
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.9e-10 69.7 60 63.3
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 3.6e-09 65.5 46 65.2
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.0e-08 63.9 92 37.0
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.1e-08 62.4 42 71.4
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 7.5e-07 57.8 57 50.9
Lj4g0012534 Lotus japonicus HOM05D009285 ORTHO05D009865 9.8e-07 57.4 89 37.1
Sc15g0003750 Simmondsia chinensis HOM05D000262 ORTHO05D009865 9.8e-07 57.4 100 32.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.2e-06 56.2 97 32.0
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 2.2e-06 56.2 41 56.1
arahy.Tifrunner.gnm1.ann1.IS4JM8 Arachis hypogaea HOM05D000262 ORTHO05D009865 2.9e-06 55.8 82 34.1
arahy.Tifrunner.gnm1.ann1.U6SQ9E Arachis hypogaea HOM05D000262 ORTHO05D009865 2.9e-06 55.8 82 34.1
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.9e-06 55.1 56 57.1
SalBow2G0330 Salvia bowleyana HOM05D009269 ORTHO05D009865 6.4e-06 54.7 78 34.6


User provided reference genes

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