Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.6e-175 618.6 316 100.0
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.2e-79 300.8 179 86.6
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 4.3e-53 212.6 331 43.8
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 5.7e-53 212.2 335 43.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 5.7e-53 212.2 335 43.6
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 4.1e-51 206.1 329 42.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.2e-50 204.5 338 43.8
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 7.7e-50 201.8 328 42.4
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.8e-49 199.5 339 42.2
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 3.8e-49 199.5 335 42.1
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 9.4e-48 194.9 328 40.2
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.4e-46 191.0 328 40.5
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 6.7e-46 188.7 338 41.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.1e-45 188.0 326 40.8
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.1e-45 188.0 318 39.0
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 4.3e-45 186.0 321 40.2
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 7.4e-45 185.3 327 41.3
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.3e-44 184.5 323 41.2
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.3e-44 184.5 338 38.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.2e-44 183.7 339 38.6
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 8.2e-44 181.8 330 37.6
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 8.2e-44 181.8 327 39.8
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.1e-43 179.9 338 37.6
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.1e-43 179.9 330 37.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 6.9e-43 178.7 343 37.0
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.2e-42 177.9 312 40.4
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 3.4e-42 176.4 340 35.9
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.5e-42 176.0 339 37.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 5.9e-42 175.6 320 36.9
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 7.7e-42 175.3 330 38.2
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.0e-41 174.9 342 36.3
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-41 174.1 312 40.1
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.4e-40 171.0 322 37.6
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.9e-40 170.6 336 35.4
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 3.2e-40 169.9 320 36.2
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 5.5e-40 169.1 322 38.5
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 5.5e-40 169.1 321 36.8
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 7.2e-40 168.7 327 37.9
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.6e-39 167.5 336 38.4
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.7e-39 166.8 321 40.5
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 3.6e-39 166.4 355 37.7
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.6e-39 166.4 335 37.0
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.9e-39 165.2 331 36.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.3e-38 163.7 316 38.6
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 8.8e-38 161.8 329 36.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.1e-37 161.4 324 36.1
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.5e-37 161.0 324 36.1
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.7e-36 156.4 321 36.4
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.7e-36 156.4 341 34.0
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 3.7e-36 156.4 331 36.9
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.8e-36 156.0 331 36.6
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 8.2e-36 155.2 342 35.1
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.3e-35 152.5 323 35.6
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 9.1e-35 151.8 328 35.4
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.5e-34 151.0 315 36.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.0e-34 150.6 325 36.3
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.0e-34 150.6 317 36.0
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.6e-34 150.2 329 34.7
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-33 148.3 317 35.3
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.2e-33 147.1 326 33.7
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.8e-33 146.4 323 33.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 8.5e-33 145.2 313 35.8
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 2.5e-32 143.7 327 34.6
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 3.2e-32 143.3 318 35.5
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.2e-32 142.9 326 35.3
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 4.2e-32 142.9 321 33.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 7.2e-32 142.1 334 34.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 2.1e-31 140.6 321 32.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 2.7e-31 140.2 328 32.3
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.6e-31 139.8 334 33.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 6.1e-31 139.0 320 35.0
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 6.1e-31 139.0 337 33.2
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.4e-30 137.9 306 35.6
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.8e-30 137.5 319 32.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.3e-30 137.1 282 37.6
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 5.2e-30 136.0 344 33.4
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.3e-29 133.3 341 31.1
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 5.7e-29 132.5 327 34.3
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 9.7e-29 131.7 323 35.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-28 131.3 330 31.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-28 131.3 330 31.8
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.2e-28 130.6 340 30.6
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.2e-28 130.6 326 31.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.2e-28 130.6 326 31.9
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 4.8e-28 129.4 322 30.7
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 8.2e-28 128.6 319 32.0
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.1e-27 128.3 338 33.4
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.8e-27 127.5 303 35.6
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.4e-27 127.1 319 31.3
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 4.1e-27 126.3 343 31.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 4.1e-27 126.3 304 31.2
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 7.0e-27 125.6 315 33.7
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 7.0e-27 125.6 311 34.7
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-26 124.8 340 31.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.6e-26 124.4 322 31.1
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 2.0e-26 124.0 344 31.7
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.6e-26 123.6 336 30.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 2.6e-26 123.6 320 31.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.5e-26 123.2 302 29.8
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 4.5e-26 122.9 339 30.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.0e-25 121.7 344 30.2
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.3e-25 121.3 328 30.8
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.3e-25 121.3 326 28.2
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.3e-25 121.3 299 29.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.8e-25 119.8 302 30.5
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-24 118.2 344 31.1
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.2e-24 116.7 325 31.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.6e-23 113.2 305 31.1
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 6.1e-23 112.5 341 29.6
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.0e-23 112.1 299 30.8
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.0e-22 110.2 326 31.3
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 3.0e-22 110.2 322 32.3
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.0e-22 109.8 288 33.3
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 5.2e-22 109.4 317 31.9
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 5.2e-22 109.4 317 31.9
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 5.2e-22 109.4 317 31.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.5e-21 107.8 311 31.5
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.0e-21 107.5 318 31.1
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.0e-21 107.5 308 29.5
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.3e-20 104.8 300 30.3
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.7e-20 104.4 322 30.1
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 8.3e-20 102.1 318 29.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.3e-20 102.1 288 31.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.4e-19 101.3 326 30.1
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.4e-19 101.3 214 37.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.8e-19 100.9 316 31.3
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 4.1e-19 99.8 313 29.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.1e-19 99.8 309 30.7
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 9.1e-19 98.6 182 39.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.0e-18 97.4 311 31.5
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 3.5e-18 96.7 281 30.6
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 5.9e-18 95.9 301 32.9
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 3.8e-17 93.2 267 31.8
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 5.5e-16 89.4 251 30.7
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 7.2e-16 89.0 333 27.0
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 9.4e-16 88.6 303 26.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.0e-14 85.1 266 29.7
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-14 85.1 246 33.7
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.8e-14 84.3 266 31.2
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 3.0e-14 83.6 111 41.4
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 3.0e-14 83.6 262 31.7
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 5.2e-14 82.8 298 27.2
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 8.8e-14 82.0 279 29.7
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.5e-13 81.3 296 29.1
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 4.4e-13 79.7 304 27.0
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 4.4e-13 79.7 281 29.9
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.7e-12 76.6 131 35.9
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 4.1e-11 73.2 266 27.1
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.5e-10 69.7 162 33.3
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.7e-09 67.8 249 29.7


User provided reference genes

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