Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02966 Eucalyptus grandis HOM05D051647 ORTHO05D045349 3.0e-113 411.8 196 100.0
Eucgr.D02197 Eucalyptus grandis HOM05D008183 ORTHO05D007254 2.7e-13 79.7 136 30.9
arahy.Tifrunner.gnm1.ann1.MHV6FT Arachis hypogaea HOM05D027442 ORTHO05D007254 4.6e-13 79.0 166 27.7
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-12 77.0 155 31.0
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.7e-12 75.1 163 30.1
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-11 73.9 155 33.5
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 1.5e-11 73.9 178 27.0
Lj1g0005496 Lotus japonicus HOM05D000003 ORTHO05D007254 1.5e-11 73.9 180 30.6
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.0e-11 73.6 157 28.7
Nitab4.5_0008049g0010 Nicotiana tabacum HOM05D001426 ORTHO05D001389 2.5e-11 73.2 134 33.6
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 3.3e-11 72.8 169 32.0
RcHm_v2.0_Chr4g0393821 Rosa chinensis HOM05D000003 ORTHO05D000022 4.3e-11 72.4 184 28.3
arahy.Tifrunner.gnm1.ann1.0Y1AJC Arachis hypogaea HOM05D027442 ORTHO05D000167 5.7e-11 72.0 144 28.5
Lj3g0000535 Lotus japonicus HOM05D000003 ORTHO05D007254 5.7e-11 72.0 180 29.4
Psat2g148120 Pisum sativum HOM05D000003 ORTHO05D000004 7.4e-11 71.6 159 32.1
MBI02_g08989_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.7e-11 71.2 165 27.3
Lj2g0007703 Lotus japonicus HOM05D000003 ORTHO05D000126 1.3e-10 70.9 173 30.1
PSO832G3711 Papaver somniferum HOM05D003407 ORTHO05D001026 1.3e-10 70.9 145 32.4
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.3e-10 70.9 170 31.2
PSO675G0080 Papaver somniferum HOM05D003407 ORTHO05D001026 1.7e-10 70.5 146 29.5
Lj4g0016137 Lotus japonicus HOM05D000003 ORTHO05D000004 2.2e-10 70.1 130 31.5
COL.COLO4_17377 Corchorus olitorius HOM05D008133 ORTHO05D009449 3.7e-10 69.3 149 27.5
RcHm_v2.0_Chr4g0422501 Rosa chinensis HOM05D000003 ORTHO05D000022 3.7e-10 69.3 161 28.6
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.8e-10 68.9 141 29.8
PSO832G3899 Papaver somniferum HOM05D003407 ORTHO05D001026 6.3e-10 68.6 184 28.3
MBI07_g15429_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.2e-10 68.2 160 30.6
MBI07_g22360_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.2e-10 68.2 160 30.6
PSO063G7282 Papaver somniferum HOM05D000003 ORTHO05D001026 8.2e-10 68.2 158 31.0
BraA09t38717Z Brassica rapa HOM05D004976 ORTHO05D004851 1.1e-09 67.8 172 32.0
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.1e-09 67.8 168 29.8
Eucgr.C00476 Eucalyptus grandis HOM05D051647 ORTHO05D045349 1.4e-09 67.4 79 39.2
FvH4_5g35622 Fragaria vesca HOM05D000003 ORTHO05D014221 1.4e-09 67.4 161 28.0
PSO339G2736 Papaver somniferum HOM05D003407 ORTHO05D001026 1.4e-09 67.4 172 26.2
PSO423G0288 Papaver somniferum HOM05D003407 ORTHO05D001026 1.4e-09 67.4 154 30.5
PSO063G2604 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-09 67.0 146 29.5
PSO339G1836 Papaver somniferum HOM05D003407 ORTHO05D001026 1.8e-09 67.0 153 28.8
PSO675G3803 Papaver somniferum HOM05D000003 ORTHO05D001026 1.8e-09 67.0 173 30.6
PSO724G0874 Papaver somniferum HOM05D000003 ORTHO05D001026 1.8e-09 67.0 139 33.8
COL.COLO4_30449 Corchorus olitorius HOM05D001332 ORTHO05D007191 2.4e-09 66.6 150 26.0
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 2.4e-09 66.6 173 29.5
RcHm_v2.0_Chr2g0115441 Rosa chinensis HOM05D008133 ORTHO05D009449 2.4e-09 66.6 174 28.7
PSO675G2494 Papaver somniferum HOM05D003407 ORTHO05D001026 3.1e-09 66.2 192 27.1
PGSC0003DMG400027758 Solanum tuberosum HOM05D001426 ORTHO05D001389 3.1e-09 66.2 142 29.6
MBI15_g34795_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.3e-09 65.5 142 33.1
MBI19_g25225_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.3e-09 65.5 150 28.7
Nitab4.5_0001771g0080 Nicotiana tabacum HOM05D001426 ORTHO05D001389 5.3e-09 65.5 132 31.8
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.9e-09 65.1 152 28.3
MBI05_g14865_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.9e-09 65.1 145 27.6
Nitab4.5_0004409g0020 Nicotiana tabacum HOM05D001426 ORTHO05D001389 6.9e-09 65.1 134 32.1
PSO478G1036 Papaver somniferum HOM05D003407 ORTHO05D001026 6.9e-09 65.1 148 29.1
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 1.2e-08 64.3 177 29.4
PSO210G5051 Papaver somniferum HOM05D000003 ORTHO05D001026 2.0e-08 63.5 134 33.6
Aqoxy4G01321 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 2.6e-08 63.2 148 25.7
Aqoxy5G02742 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 2.6e-08 63.2 152 27.0
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 2.6e-08 63.2 159 27.7
Nitab4.5_0000209g0050 Nicotiana tabacum HOM05D000155 ORTHO05D000022 3.4e-08 62.8 144 31.2
PSO063G6867 Papaver somniferum HOM05D000003 ORTHO05D001026 3.4e-08 62.8 133 32.3
PSO782G1426 Papaver somniferum HOM05D000003 ORTHO05D000004 3.4e-08 62.8 163 29.4
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 4.5e-08 62.4 137 29.2
Lj1g0020336 Lotus japonicus HOM05D000003 ORTHO05D007254 5.9e-08 62.0 163 27.6
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 5.9e-08 62.0 157 28.7
PSO170G3296 Papaver somniferum HOM05D000003 ORTHO05D001026 5.9e-08 62.0 172 29.1
PSO210G1889 Papaver somniferum HOM05D003407 ORTHO05D001026 5.9e-08 62.0 134 30.6
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 5.9e-08 62.0 170 28.8
Aqoxy5G00081 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 7.7e-08 61.6 137 29.9
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 7.7e-08 61.6 158 24.7
CANSAT56G0133 Cannabis sativa HOM05D000003 ORTHO05D000167 7.7e-08 61.6 170 28.2
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-08 61.6 151 28.5
SEGI_39148 Sequoiadendron giganteum HOM05D000352 ORTHO05D000260 1.0e-07 61.2 161 24.8
PSO782G1861 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-07 60.8 139 29.5
CANSAT80G2787 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-07 60.5 174 27.6
Nitab4.5_0000213g0180 Nicotiana tabacum HOM05D000155 ORTHO05D000022 1.7e-07 60.5 152 28.3
PSO063G4494 Papaver somniferum HOM05D003407 ORTHO05D001026 1.7e-07 60.5 159 30.2
SEGI_15436 Sequoiadendron giganteum HOM05D001690 ORTHO05D013089 1.7e-07 60.5 158 24.7
Eucgr.E01727 Eucalyptus grandis HOM05D008183 ORTHO05D007254 2.2e-07 60.1 132 28.8
Sed0013373 Sechium edule HOM05D000003 ORTHO05D000167 2.2e-07 60.1 166 27.1
BolC7t41032H Brassica oleracea HOM05D000003 ORTHO05D000004 2.9e-07 59.7 150 28.0
Nitab4.5_0000258g0090 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.9e-07 59.7 155 27.7
SHI43080 Sapria himalayana HOM05D004990 ORTHO05D000022 2.9e-07 59.7 139 29.5
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-07 59.3 135 28.9
Lj3g0010743 Lotus japonicus HOM05D000003 ORTHO05D007254 3.8e-07 59.3 85 37.6
PSO170G3596 Papaver somniferum HOM05D000003 ORTHO05D000004 3.8e-07 59.3 163 28.8
Lj5g0017569 Lotus japonicus HOM05D000003 ORTHO05D007254 5.0e-07 58.9 150 28.7
Thecc.03G325600 Theobroma cacao HOM05D000003 ORTHO05D000006 5.0e-07 58.9 134 30.6
CSS0038564 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.5e-07 58.5 132 28.0
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 6.5e-07 58.5 147 29.3
TAR648G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 6.5e-07 58.5 125 26.4
Aa31LG5G21780 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.5e-07 58.2 143 30.1
Aqoxy1G02491 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.5e-07 58.2 140 27.1
Aqoxy3G01961 Aquilegia oxysepala HOM05D009705 ORTHO05D000022 8.5e-07 58.2 133 27.1
FvH4_4g20431 Fragaria vesca HOM05D011624 ORTHO05D014221 8.5e-07 58.2 135 29.6
MBI16_g36778_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.5e-07 58.2 140 30.7
PSO210G2487 Papaver somniferum HOM05D003407 ORTHO05D001026 8.5e-07 58.2 110 31.8
Peaxi162Scf00251g00097 Petunia axillaris HOM05D000155 ORTHO05D000022 8.5e-07 58.2 138 25.4
Aa31sc174G40 Aethionema arabicum HOM05D000003 ORTHO05D001498 1.1e-06 57.8 146 31.5
Aqoxy5G02730 Aquilegia oxysepala HOM05D000003 ORTHO05D008897 1.1e-06 57.8 141 29.8
Aqoxy5G02924 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.1e-06 57.8 140 27.1
MBI14_g13525_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-06 57.8 135 29.6
Nitab4.5_0001903g0110 Nicotiana tabacum HOM05D001426 ORTHO05D001389 1.1e-06 57.8 96 34.4
Nitab4.5_0004115g0030 Nicotiana tabacum HOM05D000155 ORTHO05D000022 1.1e-06 57.8 122 29.5
PSO013G0125 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-06 57.8 161 29.2
PGSC0003DMG402031434 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.1e-06 57.8 159 27.7
Aqoxy1G01957 Aquilegia oxysepala HOM05D000650 ORTHO05D000022 1.4e-06 57.4 146 28.8
Aqoxy1G02953 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.4e-06 57.4 140 27.1
Aqoxy2G02925 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 1.4e-06 57.4 134 26.9
MBI19_g35574_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.4e-06 57.4 142 26.8
PSO210G3528 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-06 57.4 171 26.9
SEGI_30262 Sequoiadendron giganteum HOM05D000399 ORTHO05D000022 1.4e-06 57.4 147 25.9
Lj4g0023123 Lotus japonicus HOM05D000003 ORTHO05D000004 1.9e-06 57.0 153 30.1
MBI18_g23800_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.9e-06 57.0 143 26.6
RcHm_v2.0_Chr2g0122921 Rosa chinensis HOM05D008833 ORTHO05D000167 1.9e-06 57.0 169 25.4
Sp6g05670 Schrenkiella parvula HOM05D004976 ORTHO05D004851 1.9e-06 57.0 173 28.3
Aa31LG2G19820 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.5e-06 56.6 160 30.0
Nitab4.5_0000008g0280 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.5e-06 56.6 150 28.7
PSO421G0243 Papaver somniferum HOM05D003407 ORTHO05D001026 2.5e-06 56.6 159 31.4
PSO339G4411 Papaver somniferum HOM05D003407 ORTHO05D001026 3.2e-06 56.2 129 28.7
PSO832G0107 Papaver somniferum HOM05D003407 ORTHO05D001026 3.2e-06 56.2 129 29.5
Peaxi162Scf01249g00027 Petunia axillaris HOM05D000155 ORTHO05D000022 3.2e-06 56.2 141 31.2
QL03p021598 Quercus lobata HOM05D014678 ORTHO05D017106 3.2e-06 56.2 135 28.9
Rhsim01G0194100 Rhododendron simsii HOM05D018264 ORTHO05D018096 3.2e-06 56.2 140 27.9
Sed0009869 Sechium edule HOM05D000003 ORTHO05D000167 3.2e-06 56.2 164 29.3
CSS0040440 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 4.2e-06 55.8 91 28.6
MBI01_g33694_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.2e-06 55.8 187 27.3
Nn1g09993 Nelumbo nucifera HOM05D000155 ORTHO05D000022 4.2e-06 55.8 149 30.2
Nn1g10075 Nelumbo nucifera HOM05D000155 ORTHO05D000022 4.2e-06 55.8 149 30.2
Nn1g10093 Nelumbo nucifera HOM05D000155 ORTHO05D000022 4.2e-06 55.8 149 30.2
PSO063G0028 Papaver somniferum HOM05D007919 ORTHO05D006738 4.2e-06 55.8 129 30.2
PSO210G0836 Papaver somniferum HOM05D000003 ORTHO05D001026 4.2e-06 55.8 136 30.1
CANSAT25G3483 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-06 55.5 153 28.1
MBI02_g43286_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.5e-06 55.5 176 27.3
PSO063G5048 Papaver somniferum HOM05D000003 ORTHO05D001026 5.5e-06 55.5 136 29.4
PSO081G0063 Papaver somniferum HOM05D003407 ORTHO05D001026 5.5e-06 55.5 147 27.2
PSO170G2459 Papaver somniferum HOM05D000003 ORTHO05D001026 5.5e-06 55.5 156 26.9
CANSAT21G0284 Cannabis sativa HOM05D000003 ORTHO05D000167 7.2e-06 55.1 184 26.6
Nitab4.5_0000029g0030 Nicotiana tabacum HOM05D001426 ORTHO05D001389 7.2e-06 55.1 119 25.2
PSO017G3748 Papaver somniferum HOM05D000003 ORTHO05D000004 7.2e-06 55.1 137 28.5
PSO675G5608 Papaver somniferum HOM05D007919 ORTHO05D006738 7.2e-06 55.1 139 29.5
PGSC0003DMG400014002 Solanum tuberosum HOM05D000003 ORTHO05D001389 7.2e-06 55.1 131 26.0
MBI15_g36799_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.4e-06 54.7 120 29.2
Nitab4.5_0002972g0040 Nicotiana tabacum HOM05D012456 ORTHO05D004636 9.4e-06 54.7 155 25.8
PSO170G0614 Papaver somniferum HOM05D003407 ORTHO05D001026 9.4e-06 54.7 80 38.8
PSO478G0044 Papaver somniferum HOM05D003407 ORTHO05D001026 9.4e-06 54.7 81 39.5


User provided reference genes

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