Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 3179.0 1603 100.0
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2816.6 1605 90.1
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2577.4 1597 81.3
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2571.2 1606 80.6
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2570.8 1608 80.3
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2564.6 1596 79.9
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2558.5 1597 80.3
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2556.9 1607 79.5
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2554.6 1609 79.9
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2544.6 1598 78.8
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2541.1 1597 79.3
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2535.0 1609 79.7
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2526.5 1608 78.9
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2515.3 1607 78.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2511.5 1607 78.1
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2510.3 1602 77.8
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2509.9 1606 77.8
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2505.7 1620 77.7
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2502.6 1619 77.6
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2502.6 1607 77.4
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2486.4 1609 77.6
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2485.7 1603 77.4
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2478.7 1611 78.3
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2477.6 1601 77.0
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2474.5 1617 77.9
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2472.6 1610 76.9
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2458.7 1598 76.8
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2455.6 1615 76.5
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2454.9 1596 76.4
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2449.9 1580 77.5
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2447.9 1601 75.7
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2439.5 1508 81.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2425.6 1637 75.3
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2422.1 1601 75.3
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2417.9 1634 74.1
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2416.7 1607 76.5
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2399.0 1622 75.3
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2396.3 1633 74.8
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2394.8 1603 74.2
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2381.3 1498 79.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2370.9 1582 74.3
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2368.6 1908 65.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2363.6 1593 74.4
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2363.6 1595 74.0
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2357.0 1619 74.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2348.5 1592 73.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2328.9 1623 73.0
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2327.7 1599 72.2
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2320.4 1599 71.9
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2317.7 1601 73.5
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2317.7 1439 80.8
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2317.0 1662 70.8
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2315.4 1613 73.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2314.3 1607 73.3
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2313.5 1588 72.7
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2312.7 1605 72.5
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2309.3 1604 72.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2309.3 1608 72.9
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2306.9 1622 72.4
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2304.2 1605 72.1
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2298.5 1595 73.0
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2288.5 1614 71.3
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2288.1 1649 71.7
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2283.4 1603 71.2
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2263.4 1594 72.4
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2260.0 1615 71.6
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2257.3 1615 71.5
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2253.8 1506 75.2
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2246.5 1412 78.8
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2246.1 1594 71.8
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2243.0 1616 71.0
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2236.5 1620 71.1
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1620 70.9
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2229.9 1617 70.6
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2218.7 1615 70.1
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2218.4 1619 70.1
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2208.7 1619 69.5
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2198.3 1616 70.2
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2197.9 1616 70.2
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2179.1 1407 79.7
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2159.8 1550 70.6
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2149.0 1357 79.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2145.9 1940 59.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2097.4 1608 66.5
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2090.8 1597 67.1
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2065.4 1476 71.2
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2055.4 1629 65.6
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2046.6 1602 65.3
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2039.2 1625 65.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2031.1 1595 65.6
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1975.3 1196 82.5
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1917.1 1597 62.2
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1890.2 1590 61.3
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1748.0 1569 60.5
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1707.2 1217 71.2
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1701.8 1099 78.3
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1663.3 1411 63.0
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1550.0 1369 60.7
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1518.4 977 76.8
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1484.5 970 76.2
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1463.4 1623 49.3
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1410.6 1206 59.0
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1393.3 1627 47.9
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1331.2 1592 46.0
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1225.3 1079 58.9
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1186.0 731 81.1
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1174.5 1608 45.8
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.0e-299 1034.2 641 81.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 4.3e-258 896.0 615 71.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 8.4e-254 881.7 581 76.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 3.3e-250 869.8 602 74.1
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.9e-242 844.0 531 79.3
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.9e-237 827.4 601 69.4
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.1e-236 823.9 589 69.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.3e-233 814.7 648 66.2
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.5e-215 753.1 498 75.5
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 6.1e-212 742.7 521 73.5
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 3.1e-200 703.7 511 70.5
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.1e-196 691.0 639 57.9
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 6.1e-196 689.5 507 69.0
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 7.8e-183 646.0 513 65.3
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 2.3e-179 634.4 465 68.8
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 8.9e-179 632.5 412 78.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.5e-165 587.8 553 59.0
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.4e-161 572.8 483 58.8
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 2.8e-156 557.8 341 80.1
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 5.4e-152 543.5 360 78.6
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 2.2e-145 521.5 325 83.7
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.5e-129 466.8 293 81.6
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 8.7e-126 456.4 398 60.1
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.3e-123 447.2 308 72.4
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.8e-115 422.2 398 57.0
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 2.9e-113 414.8 318 65.7
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.5e-112 411.8 316 68.0
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.0e-110 404.8 369 58.0
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.7e-103 381.7 246 74.0
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.3e-102 378.6 251 72.5
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 3.0e-78 298.5 212 72.2
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.2e-69 270.0 158 82.9
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 6.0e-66 257.7 161 75.2
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 9.9e-61 240.4 142 82.4
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.9e-59 236.1 142 77.5
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.3e-49 202.6 212 54.2
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 1.1e-48 200.3 146 68.5
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 2.1e-42 179.5 129 73.6
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.1e-40 173.7 122 73.8
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.1e-39 169.5 98 79.6
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 7.6e-37 161.0 91 81.3
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.2e-35 155.6 142 58.5
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 9.3e-35 154.1 100 74.0
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-33 149.4 143 58.7
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-33 149.4 143 58.7
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-33 149.4 143 58.7
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-33 149.4 143 58.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-33 149.4 143 58.7
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-33 149.1 143 58.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.5e-32 146.7 99 66.7
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-32 146.4 143 58.0
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 4.3e-32 145.2 143 57.3
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 4.2e-27 128.6 81 76.5
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 3.5e-26 125.6 106 60.4
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 6.0e-26 124.8 106 59.4
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.3e-25 122.9 130 54.6
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.7e-25 121.3 130 53.8
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 3.3e-24 119.0 91 63.7
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.5e-21 110.2 108 58.3
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.1e-18 99.8 91 53.8
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 3.7e-15 89.0 51 74.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.4e-14 87.0 82 56.1
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 3.1e-14 85.9 54 79.6
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.8e-12 79.0 56 69.6
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.4e-11 77.0 48 68.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 9.4e-11 74.3 54 66.7
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 7.9e-10 71.2 51 62.7
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 1.8e-06 60.1 152 30.9
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 2.4e-06 59.7 55 60.0


User provided reference genes

Program Settings