Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 3018.8 1511 100.0
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2817.7 1605 90.1
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2424.0 1569 77.7
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2413.6 1597 76.2
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2412.1 1585 77.6
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2402.5 1603 76.3
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2391.7 1604 75.9
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2385.9 1608 75.8
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2377.8 1598 75.6
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2371.7 1598 75.3
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2357.4 1609 74.9
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2355.5 1592 74.7
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2354.7 1596 74.2
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2352.4 1603 74.7
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2350.5 1605 74.1
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2346.2 1605 74.1
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2345.5 1608 73.6
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2342.8 1608 73.6
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2339.7 1603 73.7
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2338.5 1614 73.7
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2320.8 1605 73.3
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2315.8 1607 74.0
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2314.3 1602 73.1
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2312.0 1598 73.7
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2311.2 1607 74.1
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2305.0 1604 73.2
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2299.6 1602 72.1
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2298.1 1602 72.4
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2297.7 1597 72.4
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2288.8 1595 73.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2288.5 1614 72.5
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2285.4 1624 71.1
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2282.7 1580 73.2
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2261.9 1598 71.3
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2259.2 1598 72.7
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2254.2 1600 72.1
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2253.0 1625 71.6
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1626 71.4
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2247.6 1510 76.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2241.5 1584 71.2
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2225.3 1609 71.4
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2220.7 1595 71.1
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2218.0 1607 70.8
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2205.6 1908 62.4
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2204.5 1614 70.3
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2202.9 1381 80.0
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2199.1 1603 70.4
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2197.5 1602 70.5
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2197.2 1572 71.6
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2195.2 1580 71.1
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2193.3 1571 71.3
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2193.3 1599 69.2
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2189.5 1496 73.9
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2188.7 1594 69.6
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2187.9 1613 70.1
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2186.8 1570 71.5
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2186.0 1599 68.9
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2185.6 1593 69.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2184.1 1580 71.0
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2182.5 1608 70.0
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2181.4 1389 78.3
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2180.6 1606 70.7
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2178.7 1575 71.1
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2178.7 1589 70.0
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2178.3 1566 70.7
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2177.1 1596 69.4
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2177.1 1572 70.1
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2176.7 1578 70.6
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2176.0 1582 70.5
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2175.6 1576 71.1
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2172.9 1571 70.3
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2172.5 1604 69.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2167.9 1658 67.3
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2162.5 1606 68.7
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2159.0 1600 68.4
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2141.3 1603 67.9
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2139.0 1575 70.2
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2137.8 1575 70.2
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2089.3 1498 70.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2039.2 1505 69.0
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2007.6 1938 56.4
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2001.1 1409 74.1
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1992.2 1590 65.6
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1983.8 1354 75.0
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1971.8 1590 64.3
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1968.0 1590 64.2
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1932.5 1476 67.8
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1930.6 1623 62.4
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1928.3 1198 81.1
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1925.2 1589 62.7
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1918.3 1589 62.8
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1877.1 1557 62.1
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1837.4 1544 61.4
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1712.2 1481 62.3
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1688.3 1217 71.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1671.4 1101 77.4
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1533.9 1368 60.4
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1528.8 1411 59.0
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1495.3 975 76.2
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1458.0 968 75.5
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1390.9 1614 47.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1337.4 1619 46.6
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1319.7 1524 47.2
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1304.7 1203 56.3
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1202.6 1081 58.5
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1175.2 731 80.3
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1122.1 1528 45.7
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.1e-268 931.0 583 80.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.3e-248 864.4 602 73.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 4.5e-241 839.3 531 78.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.9e-231 807.4 648 65.4
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.0e-229 801.6 614 65.3
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 7.3e-215 752.3 581 66.8
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-212 744.6 498 74.7
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 2.4e-210 737.3 521 73.1
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.0e-201 706.1 589 62.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.3e-200 704.9 599 61.4
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 2.4e-165 587.8 626 51.1
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 7.9e-161 572.8 555 58.0
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 2.0e-156 558.1 507 58.0
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.9e-154 551.6 511 57.3
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 5.1e-152 543.5 343 78.7
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 1.2e-148 532.3 360 76.9
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 2.4e-141 508.1 325 81.8
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 5.9e-140 503.4 461 57.0
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 3.8e-139 500.7 513 53.2
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 8.2e-134 483.0 401 62.6
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 9.1e-133 479.6 480 50.6
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 6.3e-126 456.8 293 79.9
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.7e-121 441.4 313 71.6
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.3e-115 421.8 398 56.5
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 9.5e-114 416.4 317 66.2
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 4.4e-111 407.5 369 58.0
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.4e-109 400.6 318 66.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.8e-105 388.3 341 58.4
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 9.8e-103 379.8 246 75.6
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.8e-88 332.4 226 70.4
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 3.2e-77 295.0 212 71.2
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.7e-70 272.7 158 84.2
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 8.7e-67 260.4 161 76.4
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 2.7e-60 238.8 142 78.2
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.0e-59 236.9 142 81.0
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.8e-49 202.2 212 53.3
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 4.9e-46 191.4 148 67.6
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.1e-40 172.2 98 81.6
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 6.9e-40 171.0 131 71.8
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.2e-38 166.0 110 79.1
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.4e-37 163.3 91 83.5
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-35 155.6 145 60.0
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-35 155.6 145 60.0
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-35 155.6 145 60.0
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-35 155.6 145 60.0
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-35 155.6 145 60.0
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.0e-35 155.6 142 58.5
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.9e-35 155.2 145 59.3
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.7e-35 154.5 100 74.0
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.5e-34 152.5 145 59.3
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 5.7e-34 151.4 145 58.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 2.2e-33 149.4 99 68.7
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.0e-27 130.6 81 77.8
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.0e-27 129.0 132 56.1
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.8e-27 127.5 132 55.3
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 3.7e-25 122.1 106 59.4
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 6.3e-25 121.3 106 58.5
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 6.3e-25 121.3 91 65.9
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 5.5e-21 108.2 108 57.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.4e-16 93.6 74 58.1
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 2.6e-15 89.4 51 74.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.9e-14 85.9 54 79.6
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 5.0e-14 85.1 82 54.9
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.1e-12 79.7 56 71.4
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.4e-11 77.0 48 68.8
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 4.0e-11 75.5 54 68.5
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 2.6e-10 72.8 51 64.7
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 3.8e-06 58.9 38 65.8


User provided reference genes

Program Settings