Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 5.2e-50 200.7 96 100.0
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 8.3e-40 166.8 95 84.2
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 9.8e-33 143.3 95 68.4
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 2.9e-32 141.7 94 68.1
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 8.3e-32 140.2 95 69.5
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.4e-31 138.7 95 67.4
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 4.1e-31 137.9 95 65.3
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 4.1e-31 137.9 98 66.3
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 4.1e-31 137.9 93 66.7
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 5.4e-31 137.5 95 67.4
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 5.4e-31 137.5 93 66.7
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 7.0e-31 137.1 92 67.4
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 7.0e-31 137.1 98 66.3
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 7.0e-31 137.1 98 66.3
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 2.0e-30 135.6 95 67.4
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 2.7e-30 135.2 95 65.3
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.7e-30 135.2 95 65.3
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 2.7e-30 135.2 95 64.2
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 2.7e-30 135.2 95 66.3
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 2.7e-30 135.2 95 65.3
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.5e-30 134.8 98 65.3
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 3.5e-30 134.8 95 66.3
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 3.5e-30 134.8 95 66.3
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 4.6e-30 134.4 95 64.2
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 6.0e-30 134.0 95 64.2
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 7.8e-30 133.7 93 65.6
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 7.8e-30 133.7 95 65.3
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.8e-30 133.7 95 65.3
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.8e-30 133.7 95 65.3
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 7.8e-30 133.7 95 65.3
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 7.8e-30 133.7 95 65.3
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 1.3e-29 132.9 95 62.1
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.7e-29 132.5 95 64.2
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.3e-29 132.1 95 63.2
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 2.3e-29 132.1 95 63.2
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.3e-29 132.1 96 71.9
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 3.0e-29 131.7 95 65.3
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 3.0e-29 131.7 94 64.9
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.9e-29 131.3 95 64.2
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 5.0e-29 131.0 95 64.2
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 5.0e-29 131.0 93 63.4
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 8.6e-29 130.2 95 64.2
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 8.6e-29 130.2 93 62.4
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 8.6e-29 130.2 95 63.2
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 8.6e-29 130.2 95 62.1
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 1.1e-28 129.8 95 63.2
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 1.1e-28 129.8 95 64.2
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 1.1e-28 129.8 95 63.2
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 1.1e-28 129.8 93 65.6
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 1.1e-28 129.8 95 62.1
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 1.5e-28 129.4 95 64.2
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.5e-28 129.4 95 62.1
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 2.5e-28 128.6 95 64.2
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.5e-28 128.6 94 63.8
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 3.3e-28 128.3 95 61.1
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 3.3e-28 128.3 93 61.3
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 3.3e-28 128.3 93 62.4
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 62.1
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 62.1
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 61.1
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 63.2
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 63.2
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 62.1
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 5.6e-28 127.5 95 61.1
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 7.3e-28 127.1 93 61.3
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 7.3e-28 127.1 93 61.3
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 9.5e-28 126.7 95 62.1
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 9.5e-28 126.7 93 61.3
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 1.2e-27 126.3 93 62.4
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.2e-27 126.3 95 61.1
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 1.2e-27 126.3 93 60.2
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 1.2e-27 126.3 93 60.2
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 1.6e-27 125.9 94 61.7
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.6e-27 125.9 95 60.0
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 2.1e-27 125.6 95 62.1
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 2.1e-27 125.6 95 61.1
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 3.6e-27 124.8 95 62.1
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 6.2e-27 124.0 95 60.0
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 6.2e-27 124.0 95 62.1
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 8.0e-27 123.6 95 61.1
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 8.0e-27 123.6 95 60.0
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 8.0e-27 123.6 103 58.3
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 1.1e-26 123.2 95 58.9
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.8e-26 122.5 93 61.3
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 2.3e-26 122.1 93 59.1
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 3.1e-26 121.7 95 56.8
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 3.1e-26 121.7 95 58.9
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 4.0e-26 121.3 95 60.0
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 4.0e-26 121.3 95 60.0
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 4.0e-26 121.3 93 59.1
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 4.0e-26 121.3 95 61.1
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 4.0e-26 121.3 95 61.1
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 5.2e-26 120.9 95 56.8
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 5.2e-26 120.9 95 57.9
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 5.2e-26 120.9 93 60.2
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 6.8e-26 120.6 95 58.9
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 8.9e-26 120.2 95 60.0
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 8.9e-26 120.2 88 63.6
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 8.9e-26 120.2 93 58.1
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.2e-25 119.8 95 57.9
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.5e-25 119.4 93 59.1
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 2.6e-25 118.6 94 56.4
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 2.6e-25 118.6 94 56.4
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 2.6e-25 118.6 93 55.9
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 2.6e-25 118.6 88 60.2
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.4e-25 118.2 93 61.3
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 7.5e-25 117.1 95 58.9
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 9.8e-25 116.7 95 53.7
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 9.8e-25 116.7 92 57.6
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 1.3e-24 116.3 93 61.3
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 1.7e-24 115.9 94 55.3
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 3.7e-24 114.8 95 56.8
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 1.1e-23 113.2 95 55.8
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.1e-23 113.2 95 55.8
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.1e-23 113.2 88 59.1
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 1.4e-23 112.8 95 55.8
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 1.3e-21 106.3 95 53.7
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 1.3e-21 106.3 95 53.7
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 1.3e-21 106.3 95 53.7
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 8.6e-21 103.6 76 60.5
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.1e-20 103.2 89 55.1
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 1.9e-20 102.4 103 51.5
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 2.3e-18 95.5 94 53.2
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.7e-16 88.2 59 66.1
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 6.4e-16 87.4 77 58.4
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 3.2e-15 85.1 68 57.4
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 4.1e-15 84.7 68 55.9
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 6.6e-13 77.4 57 61.4
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 4.3e-12 74.7 86 40.7
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.8e-10 69.3 86 43.0
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 4.0e-10 68.2 54 59.3
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 6.4e-08 60.8 97 36.1
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 9.3e-07 57.0 39 64.1


User provided reference genes

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