Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 1.1e-105 387.1 267 100.0
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 2.1e-53 213.4 264 49.2
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 2.6e-51 206.5 267 65.9
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.4e-51 206.1 254 56.3
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 3.4e-51 206.1 264 61.0
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 5.9e-51 205.3 267 60.7
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 7.6e-51 204.9 259 64.9
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.3e-50 204.1 260 56.5
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.9e-50 203.0 260 56.2
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 2.5e-49 199.9 259 60.2
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 4.2e-49 199.1 272 60.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.6e-48 197.2 264 54.5
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 5.1e-47 192.2 264 56.4
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 6.7e-47 191.8 263 58.2
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.1e-46 191.0 267 56.6
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 2.5e-46 189.9 268 54.1
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 3.3e-46 189.5 267 45.7
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.6e-45 187.2 268 53.4
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 2.2e-45 186.8 196 66.8
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.8e-45 186.4 263 60.1
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.7e-45 186.0 268 53.7
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.7e-45 186.0 269 46.8
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.8e-45 185.7 263 49.0
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 4.8e-45 185.7 267 58.1
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 8.2e-45 184.9 250 55.2
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.1e-44 184.5 267 49.4
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.4e-44 184.1 265 63.8
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 2.4e-44 183.3 196 56.1
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.1e-44 183.0 268 57.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 4.1e-44 182.6 262 61.5
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 5.3e-44 182.2 209 52.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 5.3e-44 182.2 256 56.2
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 6.9e-44 181.8 196 63.8
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 6.9e-44 181.8 217 60.8
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 6.9e-44 181.8 268 44.4
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 6.9e-44 181.8 262 62.6
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 9.0e-44 181.4 265 55.1
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 9.0e-44 181.4 265 55.1
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 9.0e-44 181.4 267 51.7
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 3.4e-43 179.5 266 47.4
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 3.4e-43 179.5 268 44.0
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 7.7e-43 178.3 263 55.9
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 7.7e-43 178.3 208 61.5
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 7.7e-43 178.3 260 56.9
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.7e-43 178.3 267 61.8
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.0e-42 177.9 206 50.0
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.3e-42 177.6 260 53.8
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.3e-42 177.6 270 43.3
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.2e-42 176.8 263 63.5
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-42 176.8 267 61.0
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.9e-42 176.4 216 60.2
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 2.9e-42 176.4 225 54.2
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 2.9e-42 176.4 243 45.3
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 6.5e-42 175.3 267 56.2
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.1e-41 174.5 196 62.8
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.4e-41 174.1 268 51.1
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.4e-41 174.1 234 56.8
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.4e-41 174.1 267 52.1
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.9e-41 173.7 267 43.4
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.5e-41 173.3 211 49.3
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 3.2e-41 172.9 248 46.0
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 4.2e-41 172.6 268 50.4
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 5.5e-41 172.2 265 54.0
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 5.5e-41 172.2 265 54.0
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 9.4e-41 171.4 252 55.6
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 9.4e-41 171.4 254 56.3
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.2e-40 171.0 267 53.2
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.7e-40 169.9 266 42.1
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 2.7e-40 169.9 267 53.9
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.7e-40 169.9 266 42.5
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 3.6e-40 169.5 279 51.6
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.6e-40 169.5 211 59.2
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 4.6e-40 169.1 223 54.3
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 6.1e-40 168.7 268 41.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 7.9e-40 168.3 258 48.4
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.0e-39 167.9 257 43.6
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.3e-39 166.8 281 45.6
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 5.1e-39 165.6 269 46.5
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 6.7e-39 165.2 264 48.5
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 6.7e-39 165.2 259 59.1
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 6.7e-39 165.2 267 42.7
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.1e-38 164.5 269 40.9
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.5e-38 164.1 269 42.0
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 5.7e-38 162.2 267 58.1
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 4.8e-37 159.1 268 41.4
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 4.8e-37 159.1 275 40.7
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-36 157.5 266 39.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.4e-36 157.5 255 42.0
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 2.4e-36 156.8 267 55.4
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 4.1e-36 156.0 283 47.0
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 6.9e-36 155.2 267 55.4
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 3.4e-35 152.9 267 57.7
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 5.9e-35 152.1 248 41.1
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 7.7e-35 151.8 266 46.6
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 2.2e-34 150.2 241 56.4
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 2.9e-34 149.8 267 45.3
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 3.8e-34 149.4 270 51.9
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 5.0e-34 149.1 197 65.0
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 6.5e-34 148.7 253 40.3
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 8.5e-34 148.3 253 40.3
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.4e-33 147.5 268 57.1
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 2.5e-33 146.7 251 59.8
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.7e-32 143.3 129 62.0
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 3.6e-32 142.9 266 37.6
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 6.1e-32 142.1 128 60.2
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.9e-32 141.7 238 51.7
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 1.0e-31 141.4 274 44.5
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.4e-31 141.0 193 65.8
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 5.1e-31 139.0 220 51.4
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.0e-30 137.1 205 54.6
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 4.4e-30 136.0 124 58.9
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 7.4e-30 135.2 258 49.6
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 9.7e-30 134.8 112 62.5
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.3e-29 134.4 241 47.7
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 1.7e-29 134.0 204 54.9
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 5.3e-28 129.0 132 52.3
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 7.0e-28 128.6 243 47.3
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 5.9e-27 125.6 224 37.9
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.9e-26 123.2 155 48.4
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.4e-20 103.6 135 46.7
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.2e-17 93.2 82 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 2.0e-14 84.0 214 27.1
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.6e-14 83.6 270 28.1
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.7e-13 80.9 205 30.2
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.2e-11 74.7 91 46.2
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.3e-10 71.2 90 47.8
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.9e-10 70.1 203 28.6
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 3.8e-10 69.7 93 43.0
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.0e-10 69.3 196 27.0
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.5e-10 68.9 78 47.4
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 8.5e-10 68.6 93 47.3
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 5.5e-09 65.9 94 45.7
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 6.8e-07 58.9 91 44.0
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.5e-06 57.8 181 26.0


User provided reference genes

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