Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 9.0e-37 156.4 77 100.0
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 3.7e-22 107.8 75 69.3
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 4.1e-21 104.4 75 66.7
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 5.3e-21 104.0 77 67.5
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 1.2e-20 102.8 77 63.6
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.5e-20 102.4 73 67.1
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 2.6e-20 101.7 75 61.3
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 2.6e-20 101.7 77 62.3
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 5.9e-20 100.5 72 63.9
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 7.6e-20 100.1 74 66.2
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.3e-19 99.4 74 63.5
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 3.8e-19 97.8 77 64.9
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 3.8e-19 97.8 75 64.0
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 3.8e-19 97.8 77 57.1
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 6.5e-19 97.1 74 59.5
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 6.5e-19 97.1 75 60.0
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.9e-18 95.5 82 57.3
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.9e-18 95.5 82 57.3
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.9e-18 95.5 77 62.3
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.9e-18 95.5 77 62.3
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 1.9e-18 95.5 73 61.6
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 3.2e-18 94.7 75 58.7
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 4.2e-18 94.4 74 63.5
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 7.2e-18 93.6 74 59.5
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.6e-17 92.4 76 59.2
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.7e-17 91.7 75 56.0
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 6.1e-17 90.5 71 64.8
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 6.1e-17 90.5 77 59.7
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 6.1e-17 90.5 60 68.3
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 7.9e-17 90.1 75 58.7
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.3e-16 89.4 73 58.9
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.8e-16 89.0 75 54.7
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.8e-16 89.0 73 57.5
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 2.3e-16 88.6 71 62.0
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 2.3e-16 88.6 71 60.6
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.0e-16 88.2 71 63.4
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 5.1e-16 87.4 71 63.4
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 6.7e-16 87.0 76 57.9
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 1.5e-15 85.9 71 63.4
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 1.5e-15 85.9 71 63.4
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 1.5e-15 85.9 70 62.9
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.5e-15 85.9 74 55.4
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 1.9e-15 85.5 71 63.4
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.9e-15 85.5 71 63.4
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.9e-15 85.5 77 55.8
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 2.5e-15 85.1 74 48.6
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 2.5e-15 85.1 75 58.7
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 4.3e-15 84.3 73 56.2
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 4.3e-15 84.3 71 62.0
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 7.4e-15 83.6 76 53.9
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.3e-14 82.8 77 54.5
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.3e-14 82.8 73 54.8
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 2.2e-14 82.0 83 50.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 3.7e-14 81.3 73 56.2
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 4.8e-14 80.9 73 54.8
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 6.3e-14 80.5 69 60.9
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 8.2e-14 80.1 71 54.9
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.1e-13 78.2 99 44.4
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 3.1e-13 78.2 73 54.8
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.3e-13 77.4 70 52.9
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 5.3e-13 77.4 71 52.1
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 9.1e-13 76.6 73 47.9
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 9.1e-13 76.6 72 52.8
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.0e-12 75.5 48 72.9
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.0e-11 73.2 48 70.8
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 1.7e-11 72.4 48 70.8
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.5e-10 68.6 50 68.0
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 2.5e-10 68.6 53 64.2
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.5e-10 68.6 48 62.5
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 9.4e-10 66.6 71 46.5
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 1.2e-09 66.2 48 66.7
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.8e-08 62.4 71 45.1
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.8e-08 62.4 46 63.0
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 1.8e-08 62.4 81 43.2
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.3e-08 62.0 46 60.9
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 2.6e-07 58.5 48 54.2
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 2.8e-06 55.1 51 54.9


User provided reference genes

Program Settings