Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 0.0e+00 1086.6 548 100.0
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 2.8e-140 503.1 574 47.6
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 6.2e-140 501.9 574 46.7
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 1.1e-139 501.1 566 48.2
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 9.0e-139 498.0 574 46.7
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 2.6e-138 496.5 574 46.5
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 4.4e-138 495.7 568 46.1
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 7.6e-138 495.0 568 46.3
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 8.4e-137 491.5 573 44.9
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.4e-136 490.7 568 46.0
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 5.4e-136 488.8 578 46.7
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 9.3e-136 488.0 574 44.8
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 2.7e-135 486.5 574 45.5
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 4.6e-135 485.7 572 45.5
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 6.0e-135 485.3 571 46.1
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 7.9e-135 485.0 574 45.1
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 1.0e-134 484.6 574 44.6
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 6.6e-134 481.9 575 47.5
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 1.9e-133 480.3 570 45.4
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 7.3e-133 478.4 559 46.0
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 6.2e-132 475.3 583 44.6
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 6.2e-132 475.3 627 42.4
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 8.1e-132 474.9 572 45.6
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 1.8e-131 473.8 574 44.4
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 3.1e-131 473.0 572 45.6
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 5.3e-131 472.2 574 45.3
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 5.3e-131 472.2 573 44.7
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 6.9e-131 471.9 552 45.3
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 1.2e-130 471.1 568 45.8
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 9.9e-130 468.0 571 45.2
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 2.9e-129 466.5 583 43.9
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.9e-129 466.5 583 43.9
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 1.1e-128 464.5 574 43.7
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 1.4e-128 464.2 545 47.0
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 1.2e-127 461.1 558 45.7
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 1.6e-127 460.7 567 45.1
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 3.5e-127 459.5 572 44.9
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 4.6e-127 459.1 574 43.6
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 6.0e-127 458.8 573 43.6
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 7.9e-127 458.4 586 43.5
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 7.9e-127 458.4 575 43.5
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 1.0e-126 458.0 575 43.3
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 1.3e-126 457.6 574 44.1
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 2.3e-126 456.8 574 43.7
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 3.9e-126 456.1 512 46.1
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 3.9e-126 456.1 575 43.1
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 5.1e-126 455.7 573 42.8
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 6.7e-126 455.3 574 43.0
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 8.7e-126 454.9 572 43.0
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 1.5e-125 454.1 574 43.0
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.5e-125 454.1 575 42.3
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.5e-125 454.1 575 43.0
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.9e-125 453.8 574 43.0
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 2.5e-125 453.4 572 43.0
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 3.3e-125 453.0 571 42.7
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 7.4e-125 451.8 574 42.2
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 9.6e-125 451.4 560 43.6
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 1.3e-124 451.1 575 43.0
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 1.6e-124 450.7 573 43.1
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 2.8e-124 449.9 584 43.5
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 8.1e-124 448.4 574 41.8
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 8.1e-124 448.4 574 42.0
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 1.4e-123 447.6 574 43.7
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 3.1e-123 446.4 571 43.6
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 9.0e-123 444.9 574 41.5
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 1.2e-122 444.5 573 42.6
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 2.6e-122 443.4 574 40.9
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 2.6e-122 443.4 553 43.9
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 7.6e-122 441.8 576 41.8
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 6.5e-121 438.7 601 41.1
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.1e-120 438.0 574 41.8
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 1.4e-120 437.6 573 40.8
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 9.3e-120 434.9 568 41.7
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 4.6e-119 432.6 568 42.8
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 4.6e-119 432.6 581 42.5
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 6.0e-119 432.2 574 41.6
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 1.0e-118 431.4 573 42.6
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.5e-117 427.6 568 42.8
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.9e-117 427.2 564 42.2
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.9e-117 427.2 528 44.3
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 1.9e-117 427.2 571 41.5
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 3.3e-117 426.4 568 42.8
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 5.7e-117 425.6 568 42.8
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 7.4e-117 425.2 568 42.8
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 7.4e-117 425.2 568 42.6
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 7.4e-117 425.2 568 42.8
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 9.6e-117 424.9 568 42.8
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 3.1e-115 419.9 573 41.4
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 4.1e-115 419.5 563 42.3
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 6.5e-113 412.1 577 40.9
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 7.2e-112 408.7 485 46.2
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 2.1e-111 407.1 578 42.0
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 4.6e-111 406.0 557 41.5
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 1.8e-110 404.1 565 41.6
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 8.7e-110 401.7 552 38.8
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 1.5e-109 401.0 565 42.8
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 9.7e-109 398.3 506 42.5
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.2e-108 397.1 522 41.6
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 6.3e-108 395.6 455 44.8
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 1.5e-106 391.0 574 40.2
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 3.8e-105 386.3 565 39.8
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 5.0e-105 386.0 574 38.3
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 5.7e-101 372.5 541 38.1
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 7.9e-95 352.1 534 40.1
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 2.3e-94 350.5 403 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 5.1e-94 349.4 514 38.9
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.5e-93 347.8 560 37.1
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 2.6e-93 347.1 438 42.9
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 5.7e-93 345.9 540 37.0
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 1.3e-92 344.7 570 36.0
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 2.0e-90 337.4 578 36.5
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.5e-88 331.3 557 36.8
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 9.4e-88 328.6 567 34.2
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 9.4e-88 328.6 578 36.5
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 3.6e-87 326.6 579 37.7
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 4.7e-87 326.2 546 34.8
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.4e-86 324.7 528 36.2
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 7.0e-83 312.4 530 34.7
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 2.5e-80 303.9 348 45.4
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.0e-77 294.3 477 38.2
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 7.5e-77 292.4 513 33.7
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 3.1e-75 287.0 414 40.8
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 6.1e-71 272.7 341 46.0
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 6.1e-71 272.7 341 46.6
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 6.1e-71 272.7 341 46.6
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 4.0e-70 270.0 341 46.3
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 4.0e-70 270.0 341 45.7
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 5.7e-69 266.2 341 46.0
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.7e-68 264.6 341 44.3
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 6.3e-68 262.7 345 45.8
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 4.1e-67 260.0 331 45.0
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 4.5e-66 256.5 341 44.0
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.5e-64 251.5 339 43.4
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 2.5e-64 250.8 343 43.7
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 2.8e-63 247.3 341 44.0
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 6.8e-62 242.7 316 41.5
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 2.9e-60 237.3 331 41.4
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 1.7e-57 228.0 330 43.0
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 1.8e-54 218.0 328 37.5
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.2e-54 216.5 268 42.9
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 1.3e-52 211.8 272 44.5
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.2e-52 211.1 342 39.5
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 2.9e-52 210.7 269 42.0
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 5.6e-48 196.4 222 44.1
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 5.1e-41 173.3 217 41.5
SEGI_13848 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 3.4e-37 160.6 240 37.1
AL1G48790 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 3.0e-33 147.5 177 48.6
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 4.0e-30 137.1 189 40.2
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 2.9e-28 131.0 199 38.7
Ca_18188_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 6.4e-28 129.8 176 40.9
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 2.5e-24 117.9 116 48.3
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 2.1e-23 114.8 134 47.0
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 2.1e-23 114.8 130 46.9
Cc11_g05270 Coffea canephora HOM05D003290 ORTHO05D003866 3.6e-23 114.0 134 46.3
PGSC0003DMG400010630 Solanum tuberosum HOM05D003290 ORTHO05D003866 4.6e-18 97.1 135 40.7
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 1.8e-17 95.1 110 47.3
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.5e-16 92.0 118 42.4
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 5.1e-09 67.0 114 33.3
Sopen00g005880 Solanum pennellii HOM05D003290 ORTHO05D003866 6.7e-09 66.6 127 37.8
Sopen04g009320 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-08 65.9 120 38.3
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 5.6e-08 63.5 101 36.6


User provided reference genes

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