Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-73 280.0 151 100.0
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.2e-16 90.5 84 66.7
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.3e-15 87.0 76 71.1
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.9e-15 85.9 82 63.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.9e-15 85.9 76 69.7
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 5.0e-15 85.1 69 73.9
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 2.5e-14 82.8 71 66.2
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.2e-14 82.0 85 58.8
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.5e-14 81.6 81 61.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 9.4e-14 80.9 81 58.0
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 9.4e-14 80.9 78 65.4
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 1.2e-13 80.5 89 56.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-13 80.1 89 60.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.1e-13 79.7 85 63.5
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.1e-13 79.7 83 57.8
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.6e-13 79.0 80 61.2
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 4.7e-13 78.6 83 56.6
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 6.1e-13 78.2 80 61.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 6.1e-13 78.2 71 70.4
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.1e-13 78.2 75 66.7
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.0e-12 77.4 73 63.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.0e-12 77.4 69 63.8
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 1.0e-12 77.4 81 58.0
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.0e-12 77.4 69 71.0
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.8e-12 76.6 70 64.3
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 1.8e-12 76.6 101 56.4
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.0e-12 75.9 68 63.2
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.0e-12 75.9 68 63.2
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.0e-12 75.9 69 69.6
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 4.0e-12 75.5 75 64.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 4.0e-12 75.5 88 54.5
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 4.0e-12 75.5 68 64.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 4.0e-12 75.5 74 62.2
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 5.2e-12 75.1 119 47.1
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 5.2e-12 75.1 68 64.7
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 8.8e-12 74.3 69 68.1
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 8.8e-12 74.3 69 68.1
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.8e-12 74.3 69 68.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.2e-11 73.9 58 70.7
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.2e-11 73.9 68 69.1
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.2e-11 73.9 76 60.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.2e-11 73.9 93 50.5
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 1.2e-11 73.9 64 70.3
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.5e-11 73.6 70 70.0
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 2.0e-11 73.2 74 62.2
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.0e-11 73.2 80 61.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.6e-11 72.8 66 66.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 3.3e-11 72.4 71 60.6
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.4e-11 72.0 70 68.6
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.4e-11 72.0 68 66.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 4.4e-11 72.0 90 53.3
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 5.7e-11 71.6 60 66.7
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 5.7e-11 71.6 83 55.4
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 5.7e-11 71.6 80 56.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.7e-11 71.6 77 59.7
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 5.7e-11 71.6 90 52.2
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 7.5e-11 71.2 75 61.3
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 9.7e-11 70.9 87 51.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 9.7e-11 70.9 78 56.4
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.7e-11 70.9 69 65.2
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 9.7e-11 70.9 69 65.2
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-10 70.5 58 72.4
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.3e-10 70.5 68 64.7
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.7e-10 70.1 96 55.2
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-10 70.1 80 56.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 2.2e-10 69.7 78 56.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.2e-10 69.7 78 55.1
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.2e-10 69.7 75 61.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.2e-10 69.7 83 56.6
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.8e-10 69.3 72 61.1
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 2.8e-10 69.3 76 55.3
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.7e-10 68.9 77 57.1
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.8e-10 68.6 77 54.5
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 6.3e-10 68.2 81 51.9
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 6.3e-10 68.2 72 56.9
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 8.2e-10 67.8 91 52.7
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.2e-10 67.8 66 65.2
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.1e-09 67.4 68 63.2
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.1e-09 67.4 77 57.1
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-09 67.4 70 60.0
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.4e-09 67.0 74 56.8
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-09 67.0 81 55.6
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.4e-09 67.0 75 57.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.8e-09 66.6 76 60.5
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 3.1e-09 65.9 71 62.0
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.1e-09 65.9 91 51.6
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.1e-09 65.9 69 56.5
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.1e-09 65.9 68 57.4
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 5.3e-09 65.1 74 56.8
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.3e-09 65.1 79 57.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 7.0e-09 64.7 69 55.1
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 7.0e-09 64.7 63 65.1
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.0e-09 64.7 89 50.6
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 9.1e-09 64.3 81 51.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 9.1e-09 64.3 81 51.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 9.1e-09 64.3 81 51.9
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 9.1e-09 64.3 69 56.5
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 9.1e-09 64.3 78 55.1
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.2e-08 63.9 71 60.6
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.6e-08 63.5 81 51.9
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.6e-08 63.5 81 51.9
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.6e-08 63.5 81 53.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.0e-08 63.2 78 55.1
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.0e-08 63.2 76 59.2
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.0e-08 63.2 84 51.2
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.0e-08 63.2 84 52.4
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.0e-08 63.2 89 52.8
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.0e-08 63.2 101 47.5
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 2.0e-08 63.2 83 53.0
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 2.7e-08 62.8 59 69.5
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 2.7e-08 62.8 80 53.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 2.7e-08 62.8 84 51.2
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 3.5e-08 62.4 85 47.1
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.5e-08 62.4 76 55.3
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 4.5e-08 62.0 69 56.5
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 4.5e-08 62.0 73 56.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 5.9e-08 61.6 80 47.5
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 5.9e-08 61.6 80 51.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.7e-08 61.2 79 57.0
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 7.7e-08 61.2 83 51.8
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 1.0e-07 60.8 67 56.7
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 1.3e-07 60.5 80 52.5
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.3e-07 60.5 67 53.7
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.3e-07 60.5 71 57.7
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.7e-07 60.1 110 42.7
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.7e-07 60.1 99 45.5
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.9e-07 59.3 69 55.1
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.9e-07 59.3 69 55.1
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.9e-07 59.3 74 51.4
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.9e-07 59.3 77 53.2
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.8e-07 58.9 70 57.1
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.8e-07 58.9 77 54.5
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 8.5e-07 57.8 66 56.1
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.1e-06 57.4 65 55.4
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.5e-06 57.0 77 50.6
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.5e-06 57.0 77 50.6
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.9e-06 56.6 69 56.5
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.9e-06 56.6 69 56.5
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.9e-06 56.6 80 53.8
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 2.5e-06 56.2 77 50.6
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.2e-06 55.8 63 55.6
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 3.2e-06 55.8 63 55.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 4.2e-06 55.5 77 50.6
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 5.5e-06 55.1 84 48.8
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.5e-06 55.1 75 48.0


User provided reference genes

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