Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.3e-121 439.9 237 100.0
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.1e-68 263.1 168 75.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.1e-68 263.1 172 75.6
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 6.1e-68 261.5 169 76.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 4.0e-67 258.8 169 75.1
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 4.0e-67 258.8 168 77.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 8.8e-67 257.7 168 75.0
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.6e-66 256.1 163 78.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 4.4e-66 255.4 168 73.2
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.7e-66 255.0 168 75.0
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 7.5e-66 254.6 170 72.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 7.5e-66 254.6 185 69.7
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.2e-65 253.1 169 69.8
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.2e-65 253.1 170 71.2
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.2e-65 253.1 169 73.4
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 6.3e-65 251.5 170 72.9
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 8.3e-65 251.1 170 70.6
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 8.3e-65 251.1 168 72.0
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.4e-64 249.6 168 72.0
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.1e-64 248.8 168 74.4
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.3e-64 248.4 169 72.2
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 5.3e-64 248.4 168 73.8
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 9.1e-64 247.7 170 71.2
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.2e-63 247.3 168 73.2
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.6e-63 246.9 183 68.9
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 2.7e-63 246.1 170 70.6
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 2.7e-63 246.1 168 72.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.5e-63 245.7 169 72.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.0e-62 244.2 170 68.2
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-62 243.8 163 69.9
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.7e-62 243.4 168 73.2
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.2e-62 243.0 168 70.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 2.9e-62 242.7 157 76.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.9e-62 242.7 165 72.1
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 3.8e-62 242.3 168 72.6
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 6.5e-62 241.5 165 70.3
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 8.5e-62 241.1 170 70.0
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 8.5e-62 241.1 168 72.0
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 8.5e-62 241.1 170 69.4
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.5e-61 240.4 173 71.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.9e-61 240.0 178 69.7
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 2.5e-61 239.6 173 69.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 9.4e-61 237.7 168 70.2
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.1e-60 236.5 168 69.6
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 3.6e-60 235.7 188 65.4
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.7e-60 235.3 168 66.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 4.7e-60 235.3 168 67.9
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 4.7e-60 235.3 205 59.0
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 4.7e-60 235.3 180 63.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 6.1e-60 235.0 169 68.0
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-59 233.8 169 66.9
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.5e-58 230.3 187 63.6
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 9.8e-58 227.6 169 67.5
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.7e-57 225.7 166 67.5
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.4e-56 223.0 168 67.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.4e-56 223.0 169 64.5
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.1e-56 222.6 165 67.9
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 4.1e-56 222.2 168 68.5
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 2.7e-55 219.5 169 63.3
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.7e-55 219.5 171 63.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.5e-55 219.2 171 63.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 4.5e-55 218.8 171 63.2
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.7e-55 218.0 169 63.3
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 7.7e-55 218.0 172 62.8
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-54 217.6 169 62.7
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.8e-54 215.7 232 53.4
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.6e-54 214.5 159 67.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-53 214.2 165 64.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.3e-53 212.6 187 57.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 4.2e-53 212.2 176 64.2
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.5e-53 211.1 157 66.9
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.8e-52 209.5 171 64.3
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.0e-52 208.0 169 62.7
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.0e-51 207.6 167 62.9
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 6.8e-51 204.9 135 75.6
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.1e-48 197.6 133 75.2
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 7.0e-48 194.9 141 70.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.0e-47 193.4 128 74.2
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.7e-47 193.0 130 74.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 2.7e-47 193.0 181 59.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 4.5e-47 192.2 163 58.9
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-45 187.2 141 61.7
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.9e-45 186.8 167 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 3.3e-45 186.0 157 57.3
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.3e-45 186.0 167 55.7
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.3e-45 185.7 170 54.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.3e-45 184.9 167 55.7
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.7e-44 182.2 120 75.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.0e-43 181.0 169 55.6
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.8e-43 180.3 168 53.6
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 5.8e-42 175.3 169 53.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.8e-42 175.3 119 73.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 9.8e-42 174.5 169 53.3
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 2.2e-41 173.3 167 54.5
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 4.9e-41 172.2 142 58.5
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 6.4e-41 171.8 172 52.9
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 8.3e-41 171.4 169 52.7
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.9e-40 170.2 169 52.7
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 5.4e-40 168.7 196 49.5
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-39 167.5 169 53.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-39 167.5 104 77.9
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.6e-39 167.2 173 52.6
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 4.6e-39 165.6 134 62.7
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-38 163.7 169 52.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.7e-38 163.7 173 52.0
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 5.0e-38 162.2 169 51.5
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 5.0e-38 162.2 169 51.5
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 6.6e-38 161.8 118 63.6
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 2.5e-37 159.8 169 51.5
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.6e-36 157.1 116 68.1
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.7e-36 155.6 164 51.8
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.1e-35 154.5 164 51.8
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.3e-35 153.3 134 59.0
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.7e-31 139.8 117 59.8
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 4.6e-31 139.0 119 58.8
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.9e-29 133.7 152 50.7
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 7.3e-29 131.7 136 52.2
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-28 131.0 174 42.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 3.6e-28 129.4 172 42.4
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.6e-28 129.4 170 42.9
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 8.1e-28 128.3 173 39.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-27 127.5 116 56.9
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.1e-27 126.3 118 57.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.5e-26 124.0 169 40.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 7.6e-26 121.7 169 43.8
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 1.3e-25 120.9 187 38.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 4.9e-25 119.0 171 39.2
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.9e-24 117.1 171 39.2
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 2.4e-24 116.7 171 39.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.4e-24 116.7 173 39.9
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.7e-23 113.2 172 37.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.5e-23 112.8 83 68.7
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.0e-22 111.3 168 35.7
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.4e-18 96.3 125 47.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 4.4e-18 95.9 170 35.9
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 6.4e-17 92.0 162 36.4
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 3.2e-16 89.7 54 79.6
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 4.2e-16 89.4 130 40.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 7.1e-16 88.6 52 82.7
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.5e-15 86.3 52 78.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 7.8e-15 85.1 52 78.8
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.3e-14 83.6 56 71.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 9.6e-13 78.2 70 55.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.6e-13 78.2 52 71.2
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 9.6e-13 78.2 92 43.5
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 8.1e-12 75.1 83 48.2
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.6e-10 70.1 41 80.5
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 5.4e-08 62.4 69 44.9


User provided reference genes

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