Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 7.8e-261 903.3 462 100.0
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 4.1e-185 651.7 461 72.5
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.8e-180 636.3 461 70.7
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 1.5e-179 633.3 460 69.3
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 9.1e-177 624.0 463 69.5
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 2.7e-176 622.5 464 69.0
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 7.7e-176 620.9 464 69.0
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.2e-175 619.4 464 67.7
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 8.5e-175 617.5 503 65.4
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.5e-174 616.7 461 68.8
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.9e-174 616.3 464 67.7
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 5.5e-174 614.8 462 68.0
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 5.5e-174 614.8 462 68.0
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 9.4e-174 614.0 463 68.3
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 9.4e-174 614.0 462 68.8
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.6e-173 613.2 463 67.4
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.4e-172 610.1 463 67.6
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 5.2e-172 608.2 464 66.8
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.8e-172 607.8 464 66.8
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 2.6e-171 605.9 464 68.5
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.3e-170 603.6 464 67.9
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.3e-170 603.6 466 68.0
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-170 603.2 470 66.4
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.2e-170 602.8 471 67.1
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 2.8e-170 602.4 461 67.9
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.8e-170 602.4 470 66.2
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 3.7e-170 602.1 462 67.7
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.9e-170 601.7 461 67.9
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.9e-170 601.7 470 66.2
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 8.3e-170 600.9 463 65.7
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 8.3e-170 600.9 462 67.1
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 1.1e-169 600.5 476 66.0
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 1.6e-168 596.7 461 66.8
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.5e-168 595.1 467 66.4
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 4.5e-168 595.1 464 66.8
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 7.7e-168 594.3 462 66.0
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 2.9e-167 592.4 400 74.2
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 2.9e-167 592.4 464 66.8
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 6.6e-167 591.3 460 67.4
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 1.5e-166 590.1 466 64.8
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.9e-166 589.7 461 67.2
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.6e-165 586.6 464 65.9
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 3.6e-165 585.5 467 64.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 8.0e-165 584.3 466 64.6
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.4e-164 583.6 475 65.5
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.4e-164 583.6 461 68.8
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 3.0e-164 582.4 464 64.9
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.2e-163 580.5 462 66.5
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 1.5e-163 580.1 461 66.6
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 2.0e-163 579.7 462 66.7
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 2.0e-163 579.7 462 65.2
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 1.3e-162 577.0 480 62.9
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.7e-162 576.6 431 69.1
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 1.7e-162 576.6 490 62.9
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 4.9e-162 575.1 462 66.2
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 6.4e-162 574.7 467 65.5
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.1e-161 573.9 467 63.6
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.4e-161 572.8 464 64.9
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 9.2e-161 570.9 463 64.1
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.2e-160 570.5 464 65.9
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 7.8e-160 567.8 464 65.3
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 3.0e-159 565.8 464 62.7
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 3.0e-159 565.8 463 62.2
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 3.0e-159 565.8 463 62.2
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 5.0e-159 565.1 464 62.7
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 6.6e-159 564.7 463 62.0
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 8.6e-159 564.3 463 62.6
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 8.6e-159 564.3 463 62.6
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 4.3e-158 562.0 461 64.9
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 5.6e-158 561.6 463 62.0
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 7.3e-158 561.2 463 61.8
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.8e-157 559.3 415 68.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 3.6e-157 558.9 475 62.3
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 1.0e-156 557.4 467 61.9
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.4e-156 557.0 466 62.0
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 9.8e-155 550.8 480 63.8
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.3e-154 550.4 431 65.7
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 3.7e-154 548.9 477 59.7
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 6.4e-154 548.1 488 58.8
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 7.0e-153 544.7 463 64.1
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.3e-151 540.4 499 58.7
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 2.3e-151 539.7 464 61.4
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 3.9e-151 538.9 466 63.3
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 6.6e-151 538.1 466 62.7
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 1.9e-150 536.6 470 61.7
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 5.6e-150 535.0 465 62.4
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 7.3e-150 534.6 466 59.4
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 4.7e-149 531.9 465 61.5
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 6.2e-149 531.6 365 73.4
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.8e-148 530.0 407 70.5
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 1.8e-148 530.0 467 59.3
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 4.9e-146 521.9 401 66.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.1e-145 520.8 426 64.8
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 9.2e-145 517.7 464 61.0
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.0e-143 514.2 480 59.6
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 6.6e-143 511.5 475 58.1
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.1e-140 504.2 348 73.9
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.4e-139 498.8 349 72.2
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.4e-137 493.0 544 53.5
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 9.6e-134 481.1 405 61.2
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.7e-130 470.3 336 70.2
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.4e-129 466.5 470 50.6
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.6e-125 453.8 470 49.8
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 2.8e-125 453.0 464 55.0
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 3.6e-125 452.6 404 62.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 8.4e-122 441.4 380 61.1
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 1.8e-119 433.7 461 54.9
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 3.3e-118 429.5 430 53.0
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 9.0e-116 421.4 480 52.5
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 2.0e-115 420.2 242 86.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 2.0e-115 420.2 242 86.4
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 2.9e-114 416.4 373 59.5
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.7e-109 399.4 415 54.5
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 4.8e-109 399.1 243 82.7
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 2.0e-107 393.7 372 57.5
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.3e-103 380.2 234 78.6
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 4.5e-99 365.9 383 52.0
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 9.3e-97 358.2 283 64.7
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 6.7e-95 352.1 425 50.4
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 2.9e-90 336.7 192 85.9
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 6.5e-82 308.9 294 53.7
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 3.9e-79 299.7 281 56.9
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 6.3e-77 292.4 159 86.8
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 4.1e-76 289.7 419 41.5
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.5e-73 281.2 312 53.2
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 2.5e-73 280.4 473 37.6
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 2.2e-66 257.3 307 51.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.2e-63 246.1 291 46.7
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 7.5e-62 242.3 143 81.1
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 3.7e-61 240.0 180 70.6
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 4.8e-61 239.6 461 36.7
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.1e-60 238.4 143 83.9
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-59 233.8 143 81.8
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 2.9e-58 230.3 134 85.1
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.0e-55 220.3 128 86.7
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 6.6e-50 202.6 270 44.4
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-47 193.0 406 33.5
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 7.0e-44 182.6 235 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 5.2e-39 166.4 272 37.1
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.7e-35 154.1 88 86.4
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.1e-32 144.4 92 78.3
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 2.7e-27 127.5 425 28.7
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.8e-23 114.8 122 51.6
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 3.8e-21 107.1 132 47.7
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 5.4e-20 103.2 256 29.7
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 1.5e-17 95.1 135 44.4
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.3e-17 93.6 52 86.5
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.6e-16 91.7 258 30.6
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 5.8e-14 83.2 45 84.4
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.4e-12 78.6 123 41.5
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 4.8e-08 63.5 198 28.8
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.1e-07 60.8 99 41.4
Peaxi162Scf00351g00526 Petunia axillaris HOM05D004776 ORTHO05D005777 5.3e-07 60.1 319 25.7
COL.COLO4_21805 Corchorus olitorius HOM05D000365 ORTHO05D000154 9.9e-06 55.8 32 87.5


User provided reference genes

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