Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 9.0e-265 916.4 468 100.0
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.3e-173 613.6 497 67.0
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.1e-173 612.8 497 66.8
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.4e-171 605.1 508 65.0
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 5.8e-171 604.7 509 64.6
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 7.6e-171 604.4 508 65.0
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.2e-170 602.8 508 64.8
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 8.4e-170 600.9 503 65.6
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.4e-169 600.1 505 64.8
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 5.4e-169 598.2 507 64.1
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.6e-168 596.7 500 65.6
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 6.0e-168 594.7 498 63.9
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 6.0e-168 594.7 504 65.1
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 6.0e-168 594.7 518 62.7
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.0e-167 594.0 499 63.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.1e-166 590.5 504 63.9
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.5e-166 589.3 499 64.3
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 2.8e-165 585.9 501 63.3
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 8.1e-165 584.3 514 62.6
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 8.1e-165 584.3 501 64.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 2.4e-164 582.8 499 63.7
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 5.3e-164 581.6 500 64.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 3.4e-163 578.9 499 63.3
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 7.6e-163 577.8 497 62.6
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.9e-163 577.4 500 63.6
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.3e-162 577.0 497 63.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 6.4e-162 574.7 447 68.5
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 6.4e-162 574.7 493 61.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.1e-161 573.9 482 66.2
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.9e-161 573.2 500 63.6
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.4e-161 572.8 501 63.1
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 3.0e-159 565.8 493 60.9
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 3.0e-159 565.8 599 53.9
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 3.9e-159 565.5 493 62.5
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 6.7e-159 564.7 517 59.4
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.7e-159 564.7 498 61.8
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.9e-158 563.1 494 60.7
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 9.6e-158 560.8 493 60.4
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 3.7e-157 558.9 493 60.6
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 4.8e-157 558.5 493 60.6
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.1e-156 557.4 495 61.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.4e-156 556.2 518 59.3
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 4.0e-156 555.4 449 64.4
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 6.9e-156 554.7 490 61.6
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 6.9e-156 554.7 495 63.8
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 4.5e-155 552.0 504 59.5
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 3.8e-154 548.9 497 60.0
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.9e-154 548.5 512 59.8
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 8.4e-154 547.7 497 60.0
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.2e-153 545.8 479 63.0
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 4.2e-153 545.4 481 61.1
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.5e-152 542.3 501 58.7
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.8e-151 540.0 501 58.3
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 3.9e-151 538.9 501 60.7
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 6.7e-151 538.1 499 58.1
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 2.5e-150 536.2 446 62.3
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 2.1e-149 533.1 464 61.9
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 4.8e-149 531.9 503 58.4
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.0e-148 528.9 430 64.7
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 6.9e-148 528.1 496 58.3
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.2e-147 527.3 451 61.6
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 6.5e-146 521.5 496 58.1
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.9e-145 520.0 491 56.6
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.2e-145 519.2 483 58.0
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.6e-144 516.9 492 57.7
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.8e-143 513.5 463 59.8
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.0e-143 512.7 453 58.9
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 5.1e-143 511.9 493 56.8
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 8.7e-143 511.1 504 56.2
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 8.7e-143 511.1 504 56.2
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.7e-142 508.4 499 55.7
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.6e-141 506.9 500 55.4
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 1.6e-141 506.9 440 63.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 3.7e-141 505.8 500 56.2
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 4.8e-141 505.4 500 55.4
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 4.8e-141 505.4 477 56.8
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 2.4e-140 503.1 501 55.3
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 4.1e-140 502.3 505 55.6
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 9.0e-140 501.1 502 55.0
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.0e-139 500.0 502 54.4
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 6.5e-138 495.0 449 59.9
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.5e-138 494.6 501 53.9
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.9e-137 493.4 477 56.2
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 2.5e-137 493.0 504 55.2
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 9.4e-137 491.1 487 55.4
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 2.7e-136 489.6 477 56.2
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.4e-135 487.3 498 53.8
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.7e-135 485.0 443 59.4
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.1e-134 484.2 422 59.7
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.1e-134 484.2 467 56.1
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.5e-134 483.8 493 53.8
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.5e-134 483.0 481 54.9
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 3.3e-134 482.6 492 55.1
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 1.7e-133 480.3 443 59.1
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-132 477.6 502 52.6
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 2.4e-132 476.5 491 54.0
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.0e-130 471.1 516 52.1
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 1.3e-130 470.7 512 54.1
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.7e-130 470.3 505 52.1
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.2e-130 469.9 498 52.4
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.2e-128 464.2 494 51.4
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.8e-127 460.3 498 53.2
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 3.9e-127 459.1 474 54.4
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 6.7e-127 458.4 447 57.3
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.8e-125 453.0 448 56.9
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-124 450.3 491 52.1
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 7.0e-124 448.4 447 55.7
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 1.5e-121 440.7 515 49.9
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 3.2e-121 439.5 409 61.9
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 2.1e-120 436.8 465 53.1
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 2.7e-120 436.4 514 48.2
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.1e-118 431.0 428 56.8
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 2.0e-118 430.3 494 52.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 6.3e-109 398.7 405 54.1
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 2.4e-108 396.7 400 55.2
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 7.0e-108 395.2 463 49.9
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 3.2e-105 386.3 500 46.8
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 7.2e-105 385.2 421 54.2
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.7e-104 383.3 324 58.3
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 8.8e-103 378.3 390 56.7
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.7e-98 364.0 277 65.3
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 5.7e-94 349.0 369 56.9
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.3e-93 347.8 430 49.1
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 2.2e-93 347.1 311 58.2
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.3e-90 337.8 451 44.1
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 5.6e-89 332.4 349 53.6
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.4e-84 317.8 195 76.9
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 1.4e-79 301.2 468 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.8e-79 300.8 490 39.2
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.4e-71 274.6 193 69.9
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 1.2e-67 261.5 238 56.3
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 2.1e-67 260.8 303 46.2
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 1.8e-63 247.7 290 48.6
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.0e-62 244.2 234 59.4
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.0e-62 244.2 273 51.3
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 4.9e-61 239.6 467 32.5
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 4.4e-54 216.5 193 59.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 8.4e-37 159.1 133 61.7
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 3.3e-33 147.1 299 31.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-32 144.1 131 59.5
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 6.9e-31 139.4 83 75.9
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.5e-30 138.3 201 38.8
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 2.2e-29 134.4 413 26.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.0e-26 125.6 84 69.0
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.4e-20 105.1 128 50.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-17 95.1 67 65.7
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.7e-16 91.7 170 37.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.2e-16 91.3 64 65.6
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-15 89.0 64 64.1
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.6e-14 84.3 82 54.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 3.2e-12 77.4 57 64.9
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 3.6e-11 73.9 46 71.7
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 4.7e-11 73.6 72 55.6
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 7.9e-11 72.8 71 54.9
Zm00001eb331980 Zea mays HOM05D000433 ORTHO05D000443 2.3e-10 71.2 71 54.9
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 4.1e-07 60.5 66 48.5


User provided reference genes

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